Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq56 86.0 6e-12
>seq56
Length=137465
Score = 86.0 bits (94), Expect = 6e-12
Identities = 152/218 (70%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553
|||| |||| |||||| ||||| ||||| || | ||||| | || || |||||
Sbjct 86315 ATTTCCAGCTCGGGGAAAGGTCGCGGCTCGCGCTCTAGCTGTGTTCGAAGAGCGTCGATA 86374
Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAACC 6611
|||| | ||||| ||| || || |||| |||| | | || | || ||| | |
Sbjct 86375 TGGTCAATGTAGACATGTGCGTCGCCCATGACGTGGGTAA-AGGTTCCTGGGACAAGATC 86433
Query 6612 CCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCC 6671
|| || ||||||| ||| | || |||| ||||| || |||||||||||||| | |
Sbjct 86434 GCAA-ACGTGAGCGAGCATATGTGTCAGCAATGCGTAGCTGGCAATGTTGAACGGGATGC 86492
Query 6672 CTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709
| | |||||||| | ||||| || || |||||||||
Sbjct 86493 CCAGACCCATGTCGCAGGATCGCTGGTATAGCTGGCAG 86530
Score = 86.0 bits (94), Expect = 6e-12
Identities = 152/218 (70%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695
||||||||| || || ||||| | |||||||| | || | |||||||||||||| ||
Sbjct 86530 CTGCCAGCTATACCAGCGATCCTGCGACATGGGTCTGGGCATCCCGTTCAACATTGCCAG 86471
Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755
||||| |||| || | ||| ||||||| || || | | ||| || | || |
Sbjct 86470 CTACGCATTGCTGACACATATGCTCGCTCACGT-TTGCGATCTTGTCCCAGGAACCT-TT 86413
Query 34756 GCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAG 34813
| |||| |||| || || ||| ||||| | |||| ||||| || || | |||
Sbjct 86412 ACCCACGTCATGGGCGACGCACATGTCTACATTGACCATATCGACGCTCTTCGAACACAG 86353
Query 34814 CTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851
|| | || ||||| ||||| |||||| |||| ||||
Sbjct 86352 CTAGAGCGCGAGCCGCGACCTTTCCCCGAGCTGGAAAT 86315
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448254336880080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |