Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq38 149 1e-30
seq5 145 2e-29
seq1439 131 4e-25
seq287 122 2e-22
seq795 93.3 1e-13
>seq38
Length=159530
Score = 149 bits (164), Expect = 1e-30
Identities = 166/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||| || ||||| || || |||| ||||| |||| || |||
Sbjct 138716 ACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 138657
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| |||||||| || |||||||| | || || ||||| || ||||| ||
Sbjct 138656 CCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCC 138597
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||||||| ||||||||||| || | ||||| || |
Sbjct 138596 CTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCGAG 138537
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||||||| || | || || | ||| | ||||||
Sbjct 138536 GGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 138495
Score = 134 bits (148), Expect = 3e-26
Identities = 148/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | ||||||||| || || || |||| ||||| |||| || ||| | || ||
Sbjct 138991 AGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCGTCC 138932
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| || || || ||||| || || ||||| ||||||||
Sbjct 138931 TCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 138872
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || |||||||| || || | || || || | ||||| |||
Sbjct 138871 TGGATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGACCTCAAGAGTGATGGTC 138812
Query 225682 TTGCCCGTCAAAGTTTT 225698
||||| |||| |||||
Sbjct 138811 TTGCCGGTCAGGGTTTT 138795
>seq5
Length=314554
Score = 145 bits (160), Expect = 2e-29
Identities = 167/225 (74%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | |||||| |||||||| || || || || |||| ||||| ||| || ||
Sbjct 52328 ACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 52387
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || |||||||| ||||||||||| | ||| || ||||| || ||||| ||
Sbjct 52388 GCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCC 52447
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| || ||||||||||| || | ||||| || |
Sbjct 52448 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 52507
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||||||||| ||||| | || || | ||| | ||||| ||
Sbjct 52508 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 52552
>seq1439
Length=29999
Score = 131 bits (144), Expect = 4e-25
Identities = 206/289 (71%), Gaps = 7/289 (2%)
Strand=Plus/Plus
Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGAT 7499
|| |||||||||||||||| ||||| || ||||| ||| || ||||| | |
Sbjct 18896 ACTTTATATTTAATATTTGCCTTATTTTCAGG-ATTATTAGGAACAGCCTTTTCAGTATT 18954
Query 7500 TATAAGGTTAGAA-TTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558
||||| |||||| |||| || || ||| |||| || | || |||| |||| | |
Sbjct 18955 AATAAGATTAGAACTTAG-TGGACCTGGTGTTCAA---TTTATTGCCAATAACCAATTAT 19010
Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618
| || |||||| || || || || || | ||||| |||||| | |||||||| |
Sbjct 19011 ATAATAGTATTATAACAGCTCACGCTATTTTAATGATATTCTTTATGGTTATGCCAGCCT 19070
Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678
| ||||| || ||||| |||| || | ||||||||||| || | ||||||||||| |
Sbjct 19071 TAATAGGAGGATTCGGTAATTTCTTAATGCCTTTAATGATAGGAGGACCTGATATGGCAT 19130
Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727
| || || | || ||||| ||||| |||||| |||| ||| |||||
Sbjct 19131 TCCCTAGATTAAATAATATCAGTTTCTGATTATTACCACCTAGTTTATT 19179
>seq287
Length=39990
Score = 122 bits (134), Expect = 2e-22
Identities = 138/184 (75%), Gaps = 1/184 (1%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| || | || |||| ||||| || |||||||| |||||||||||
Sbjct 4477 TTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 4536
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| ||| || || || || ||||| || |||||||| |||||||| ||| ||| |||
Sbjct 4537 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4596
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705
|| ||||| |||| || || || | ||||| ||||||||||||| || || | |||
Sbjct 4597 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA- 4655
Query 225706 ACTT 225709
||||
Sbjct 4656 ACTT 4659
>seq795
Length=2952
Score = 93.3 bits (102), Expect = 1e-13
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 7566 TATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGG 7625
||| || || ||||||||| | | |||||||| || | |||||||| | | |||||
Sbjct 2890 TATAATAACAGCGCATGCCATATTGATGATTTTTTTCATGGTTATGCCTGCATTAATAGG 2831
Query 7626 CGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAG 7685
||||| || |||| || | || ||| | | || | ||| |||||||| ||||| ||
Sbjct 2830 AGGTTTTGGTAATTTCTTATTACCATTACTAGTAGGAGGTCCAGATATGGCATTTCCTAG 2771
Query 7686 GCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731
| || |||||||||||||||||| || ||| |||||| ||
Sbjct 2770 ATTAAATAATATAAGTTTTTGATTATTAGTTCCTAGTTTATTTTTA 2725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192509213078666
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |