Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq38 149 1e-30 seq5 145 2e-29 seq1439 131 4e-25 seq287 122 2e-22 seq795 93.3 1e-13 >seq38 Length=159530 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || ||||| || || |||| ||||| |||| || ||| Sbjct 138716 ACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 138657 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| || |||||||| | || || ||||| || ||||| || Sbjct 138656 CCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCC 138597 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||||| ||||||||||| || | ||||| || | Sbjct 138596 CTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCGAG 138537 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || || | ||| | |||||| Sbjct 138536 GGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 138495 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||||||||| || || || |||| ||||| |||| || ||| | || || Sbjct 138991 AGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCGTCC 138932 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || || ||||| |||||||| Sbjct 138931 TCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 138872 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || |||||||| || || | || || || | ||||| ||| Sbjct 138871 TGGATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGACCTCAAGAGTGATGGTC 138812 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| |||| ||||| Sbjct 138811 TTGCCGGTCAGGGTTTT 138795 >seq5 Length=314554 Score = 145 bits (160), Expect = 2e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| |||||||| || || || || |||| ||||| ||| || || Sbjct 52328 ACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 52387 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||||| | ||| || ||||| || ||||| || Sbjct 52388 GCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCC 52447 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || ||||||||||| || | ||||| || | Sbjct 52448 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 52507 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||| ||||| | || || | ||| | ||||| || Sbjct 52508 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 52552 >seq1439 Length=29999 Score = 131 bits (144), Expect = 4e-25 Identities = 206/289 (71%), Gaps = 7/289 (2%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGAT 7499 || |||||||||||||||| ||||| || ||||| ||| || ||||| | | Sbjct 18896 ACTTTATATTTAATATTTGCCTTATTTTCAGG-ATTATTAGGAACAGCCTTTTCAGTATT 18954 Query 7500 TATAAGGTTAGAA-TTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558 ||||| |||||| |||| || || ||| |||| || | || |||| |||| | | Sbjct 18955 AATAAGATTAGAACTTAG-TGGACCTGGTGTTCAA---TTTATTGCCAATAACCAATTAT 19010 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | || |||||| || || || || || | ||||| |||||| | |||||||| | Sbjct 19011 ATAATAGTATTATAACAGCTCACGCTATTTTAATGATATTCTTTATGGTTATGCCAGCCT 19070 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 | ||||| || ||||| |||| || | ||||||||||| || | ||||||||||| | Sbjct 19071 TAATAGGAGGATTCGGTAATTTCTTAATGCCTTTAATGATAGGAGGACCTGATATGGCAT 19130 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 | || || | || ||||| ||||| |||||| |||| ||| ||||| Sbjct 19131 TCCCTAGATTAAATAATATCAGTTTCTGATTATTACCACCTAGTTTATT 19179 >seq287 Length=39990 Score = 122 bits (134), Expect = 2e-22 Identities = 138/184 (75%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| || | || |||| ||||| || |||||||| ||||||||||| Sbjct 4477 TTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 4536 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||| || || || || ||||| || |||||||| |||||||| ||| ||| ||| Sbjct 4537 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4596 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 || ||||| |||| || || || | ||||| ||||||||||||| || || | ||| Sbjct 4597 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA- 4655 Query 225706 ACTT 225709 |||| Sbjct 4656 ACTT 4659 >seq795 Length=2952 Score = 93.3 bits (102), Expect = 1e-13 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 7566 TATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGG 7625 ||| || || ||||||||| | | |||||||| || | |||||||| | | ||||| Sbjct 2890 TATAATAACAGCGCATGCCATATTGATGATTTTTTTCATGGTTATGCCTGCATTAATAGG 2831 Query 7626 CGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAG 7685 ||||| || |||| || | || ||| | | || | ||| |||||||| ||||| || Sbjct 2830 AGGTTTTGGTAATTTCTTATTACCATTACTAGTAGGAGGTCCAGATATGGCATTTCCTAG 2771 Query 7686 GCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731 | || |||||||||||||||||| || ||| |||||| || Sbjct 2770 ATTAAATAATATAAGTTTTTGATTATTAGTTCCTAGTTTATTTTTA 2725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192509213078666