Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq135 161 1e-34 >seq135 Length=88816 Score = 161 bits (178), Expect = 1e-34 Identities = 1018/1618 (63%), Gaps = 32/1618 (2%) Strand=Plus/Plus Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828 ||||| ||| | ||| ||||| || || | || |||| | ||||| || |||||||| Sbjct 28559 TTCTTGATCGACTGTGAACTGGATAGGTGCAGCCGCGGCCTGGGTACGCAGGTAGTACAT 28618 Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888 ||||| || ||||| || |||| || |||||||||||| || | ||| | Sbjct 28619 GCCAGTCTTGAGACCAAGCTTCCAGCCAGTGAAATGCATGCTGGTAATCTTGCCCATTGT 28678 Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948 ||||| || || || |||| ||||| ||||| |||||||| || | || || Sbjct 28679 GGGATCCTTCATGTGGATGTTCAAGGACTGGGACTGATCAATGAAAGCACCACGGTCGGC 28738 Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008 | ||| | | ||| ||||| ||| ||||||| ||| ||| | | ||||| Sbjct 28739 TGACATCTGGACAATTTGACGTTGAGAAATCTCCCAAACAGTCTTGTACAGGGCCTTGAT 28798 Query 77009 ATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065 || | |||| ||| | | || || || || || || | || || ||||| Sbjct 28799 GTCGGCGGGAATGTTGGGAATGTTCTGGATAGAGCCGTTCTCAGCAATGATGCGGTTCTT 28858 Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125 ||| |||| ||| | | || | | | | || || || || || | Sbjct 28859 CATAGCATCGGACCAAAGGCCGGTATCGACAAGATCCTTGAGAAGCCAGGGGTTGACAAC 28918 Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185 || || || |||| | || | || ||| || || ||| || || || | | | Sbjct 28919 CTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAACA 28978 Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245 || ||||| ||||| || || | ||| ||||| |||||||| || || | || || Sbjct 28979 CTCGTTGTTACCCAAGATCTGGGAAGTGCTGGCAGTGGGCATAGGGGCGACGAGCAAGCT 29038 Query 77246 ATTTCTGAGACCATGTGTTC--TGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCT 77303 || | ||||| ||| || | |||| || || || | | ||| ||||| || || Sbjct 29039 GTTGCGAAGACC--GTGCTCCTTAATTTGCTCCTTGAGCGAATCCCACTCCCACAGGTCG 29096 Query 77304 GAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTA 77363 | || |||||||| | || ||||| ||||| || | | || |||||| || Sbjct 29097 GTGGGCTTGACATCCCACATGTCATATTGAAGAATGCCTTCAGAGGCGGGTGATCCCTTG 29156 Query 77364 TATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAA 77423 ||| |||||| ||||| | || | || | || || | || | | Sbjct 29157 AATGACGAATAAGGACCTTCAACCTTGGCAATCTCCATAGAGGCCTCAAGGGCAGCATGG 29216 Query 77424 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAA 77483 || || || || || || | ||| || || || | ||||| || || ||| | Sbjct 29217 TAGATGGTCTCAAAGATTTGCTTGTTCAGCTCACGAGCTTCGGGTGATTCGAAGGGAAGA 29276 Query 77484 TGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTC 77543 | | | || || ||||| || | |||||| || |||| |||||| |||| || | Sbjct 29277 CGCAGAGCAAGGAAAGCATCAGCAAGTCCCTGGACACCAACACCAATGGGTCGGTGACGG 29336 Query 77544 TTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGA 77603 | ||| | ||| || ||| ||| || || || | || || || ||||| Sbjct 29337 CTGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTAGTTCACATCGATGATGCGGTTGAGG 29396 Query 77604 TTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATC--TA 77661 || | ||||| || || || || | || || ||| ||| | | ||| || | Sbjct 29397 TTACGGACAACCACCTTTGTAACTTCGTGAAGCTTTTTAAAGTCATAGCATCCTTCGTTG 29456 Query 77662 TA----ACAAA--CATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAG 77715 || ||||| || | | ||| | ||| || | || || || || ||||||| || Sbjct 29457 TAGTCGACAAAAGCAGGG--AGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCATCAG 29514 Query 77716 CGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTT 77775 | || | || ||||| || || || || | ||| || ||||| || | Sbjct 29515 GCGCAGAGTACTCAATAATCTCAGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCT 29574 Query 77776 GTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAA 77835 ||||||||||| ||||| ||||| || || || || || | || || ||| Sbjct 29575 TCTGGTTGCTCTTGCGGTTGCAGCTATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAG 29634 Query 77836 TCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATCATAGATTTGT-ATCG 77893 |||| | || | ||||| | ||| | | ||| |||| || || ||| | | Sbjct 29635 TCTGGGCCTCCAGGATAGAGTACCACA-GCTTCTGAGCTCGGAT---AGTCTTGCGACCA 29690 Query 77894 CCTCTCTCTTTC--ATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAA-CA-TCAT 77949 | || ||| ||| ||| | ||| || || ||||| ||| ||| | || ||| Sbjct 29691 CGTCCCTCCTTCTCATACTTCTCATACAGAGCCTCGAATTC--CTCGCCATAGCAGTCAG 29748 Query 77950 CCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGT-CACCATCTTCCTTAACTCGT 78008 | | |||||||||||||| ||||||||||| | ||| | || |||| || || || Sbjct 29749 CAAGGCCAGGGCATTCATTAGGGCACATCAAAGTCCAATCCAAGTTCTT-CTCGACGCGC 29807 Query 78009 TTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCA 78068 ||||| || |||||||| ||||| ||||| | || || || |||| | ||||| Sbjct 29808 TTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCC 29867 Query 78069 TTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 78128 || || ||||| || || || ||||| | | ||| | ||||| || || || Sbjct 29868 TTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGG 29927 Query 78129 TATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTA 78188 || || || | | ||||| || || || || ||||| || | |||||||| ||||| Sbjct 29928 TAGATGGCAAAGGCACCAGGACGCTTGTTTCCACCCTGGTCGACGTATCTGGCAGTGTTG 29987 Query 78189 TTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 || | || | | ||| || || |||||||| || || || ||||| || | |||||| Sbjct 29988 TTGAAGACACGAAGCATGGGGATGATACCGTTGGAGGTACCGTTTGTGCCGGCGATATAA 30047 Query 78249 CTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATT 78308 || | || || ||| | | | || || || || |||||||| || || Sbjct 30048 GAGCCTGTGGCACGGATACGGTGGACGTTGAGGCCGATACCACCAGCCATCTTGGAAATC 30107 Query 78309 AGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAA 78366 | || || ||||| ||||||||||||||||| || ||||| ||| |||||| || Sbjct 30108 ATGGCACATGTCTTCAAAGTATCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCAA 30165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694656304644960