Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq135 170 3e-37 >seq135 Length=88816 Score = 170 bits (188), Expect = 3e-37 Identities = 1022/1618 (63%), Gaps = 32/1618 (2%) Strand=Plus/Plus Query 75365 TTCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423 ||||| ||| | |||||||| || || | | || | | ||||| || |||||||| Sbjct 28559 TTCTTGATCGACTGTGAACTGGATAGGTGCAGCCGCGGCCTGGGTACGCAGGTAGTACAT 28618 Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483 ||||| || ||||| || |||| || |||||||||||| || | ||| | Sbjct 28619 GCCAGTCTTGAGACCAAGCTTCCAGCCAGTGAAATGCATGCTGGTAATCTTGCCCATTGT 28678 Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543 ||||| || || || |||| ||||| ||||| |||||||| || | || || Sbjct 28679 GGGATCCTTCATGTGGATGTTCAAGGACTGGGACTGATCAATGAAAGCACCACGGTCGGC 28738 Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603 | ||| | | ||| ||||| ||| ||||||| ||| ||| | | ||||| Sbjct 28739 TGACATCTGGACAATTTGACGTTGAGAAATCTCCCAAACAGTCTTGTACAGGGCCTTGAT 28798 Query 75604 ATCATCTGGAAGATTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660 || | |||| || | | || || || || ||| |||| || || ||||| Sbjct 28799 GTCGGCGGGAATGTTGGGAATGTTCTGGATAGAGCCGTTCTCAGCAATGATGCGGTTCTT 28858 Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720 || |||| ||| | | ||| | | | | || || || || |||| Sbjct 28859 CATAGCATCGGACCAAAGGCCGGTATCGACAAGATCCTTGAGAAGCCAGGGGTTGACAAC 28918 Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 || || || |||| | || | ||| ||| || || ||| || || || | | | Sbjct 28919 CTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAACA 28978 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 || ||||| ||||| || || | ||| ||||| |||||||| || || | || || Sbjct 28979 CTCGTTGTTACCCAAGATCTGGGAAGTGCTGGCAGTGGGCATAGGGGCGACGAGCAAGCT 29038 Query 75841 ATTTCTGAGACCATGTGTTC--TGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCT 75898 || | ||||| ||| || | |||| || || || | | ||| ||||| || || Sbjct 29039 GTTGCGAAGACC--GTGCTCCTTAATTTGCTCCTTGAGCGAATCCCACTCCCACAGGTCG 29096 Query 75899 GATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTA 75958 | || |||||||| | || ||||| ||||| || | || |||||| || Sbjct 29097 GTGGGCTTGACATCCCACATGTCATATTGAAGAATGCCTTCAGAGGCGGGTGATCCCTTG 29156 Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAA 76018 ||| |||| || || | || | || | ||||| | ||| | | Sbjct 29157 AATGACGAATAAGGACCTTCAACCTTGGCAATCTCCATAGAGGCCTCAAGGGCAGCATGG 29216 Query 76019 TAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAA 76078 || || || || || || | ||| || || || | ||||| | || || ||| | Sbjct 29217 TAGATGGTCTCAAAGATTTGCTTGTTCAGCTCACGAGCTTCGGGTGATTCGAAGGGAAGA 29276 Query 76079 TGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTC 76138 | | | || || ||||| || |||||||| || |||| |||||| |||| || | Sbjct 29277 CGCAGAGCAAGGAAAGCATCAGCAAGTCCCTGGACACCAACACCAATGGGTCGGTGACGG 29336 Query 76139 TTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGA 76198 | ||| | ||| || ||| |||||| || || | ||| || || ||||| Sbjct 29337 CTGTTGCTGTTGCGAGCCTCCTGAACAGGGTAGTAGTTCACATCGATGATGCGGTTGAGG 29396 Query 76199 TTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATC---- 76254 || | |||||| || || || || | || || ||| ||| | ||| || Sbjct 29397 TTACGGACAACCACCTTTGTAACTTCGTGAAGCTTTTTAAAGTCATAGCATCCTTCGTTG 29456 Query 76255 TA-TC-ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCA 76312 || || ||||| | ||||| | ||| || | || || || || ||||||| || Sbjct 29457 TAGTCGACAAAAGCAGGGAGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCATCAGGC 29516 Query 76313 TTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGT 76372 | || | || ||||| ||||| || || | ||| ||||| || || | Sbjct 29517 GCAGAGTACTCAATAATCTCAGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTC 29576 Query 76373 TGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATC 76432 ||||||||||| ||| || ||||| || || | || || | ||||| ||| || Sbjct 29577 TGGTTGCTCTTGCGGTTGCAGCTATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTC 29636 Query 76433 TGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATTATAGATTTGT-ATCGCT 76490 || | || | ||||| | ||| | | ||| |||| || || ||| | | | Sbjct 29637 TGGGCCTCCAGGATAGAGTACCACA-GCTTCTGAGCTCGGAT---AGTCTTGCGACCACG 29692 Query 76491 TCTCTCTTTC--ATA-TTGTG-TATATAACCGTTCAAATTCATCTCCCCAAA-CA-TCAT 76544 || ||| ||| ||| || | || | | || || ||||| ||| ||| | || ||| Sbjct 29693 TCCCTCCTTCTCATACTTCTCATACAGAGCC--TCGAATTC--CTCGCCATAGCAGTCAG 29748 Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTC-ACCATCTTCCTTAACCCGT 76603 | | ||||| |||||||| || |||||||| | ||| || | ||||| | || || Sbjct 29749 CAAGGCCAGGGCATTCATTAGGGCACATCAAAGTCCAATCCAAGTTCTTC-TCGACGCGC 29807 Query 76604 TTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCA 76663 ||||| || |||||||| ||||| ||||| | || || || |||| | ||||| Sbjct 29808 TTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCC 29867 Query 76664 TTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723 || || ||||| || || |||||||| | | ||| | ||||| || || || Sbjct 29868 TTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGG 29927 Query 76724 TATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTA 76783 || || || | |||| || || || || || ||||| || | |||||||||||||| Sbjct 29928 TAGATGGCAAAGGCACCAGGACGCTTGTTTCCACCCTGGTCGACGTATCTGGCAGTGTTG 29987 Query 76784 TTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAA 76843 || | || | | ||| || || || ||||| || ||||| ||||| || | |||||| Sbjct 29988 TTGAAGACACGAAGCATGGGGATGATACCGTTGGAGGTACCGTTTGTGCCGGCGATATAA 30047 Query 76844 CTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATT 76903 || ||||| ||| | ||||| || || || ||||| || || || Sbjct 30048 GAGCCTGTGGCACGGATACGGTGGACGTTGAGGCCGATACCACCAGCCATCTTGGAAATC 30107 Query 76904 AGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAA 76961 | ||||| ||||| || || ||||| ||||| || || || ||| |||||| || Sbjct 30108 ATGGCACATGTCTTCAAAGTATCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCAA 30165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712921576092480