Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06-
08] 1,439 sequences; 37,686,724 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq5 178 3e-39
seq38 167 5e-36
seq287 138 2e-27
seq219 109 1e-18
seq116 95.1 3e-14
>seq5
Length=314554
Score = 178 bits (196), Expect = 3e-39
Identities = 178/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||||||||| || ||||| || | || || || ||||||||||||||
Sbjct 52322 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCT 52381
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || || || |||||||| || || ||||| ||
Sbjct 52382 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGG 52441
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || ||
Sbjct 52442 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 52501
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| || ||||||||||| ||||| | ||||| ||||| |||||||| ||
Sbjct 52502 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 52552
>seq38
Length=159530
Score = 167 bits (184), Expect = 5e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||||||||| || || |||| || | ||||| || || ||||||||||||||
Sbjct 139234 CCACCACGCAGACGGAGAACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 139175
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || || || || || || || || || |||||||| | ||| || |||||| |||
Sbjct 139174 AGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGGA 139115
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|||||||||||||| |||||||||| ||| || | ||||| || || || | || ||
Sbjct 139114 ATACCCTCCTTGTCCTGGATCTTTGATTTGACATTGTCGATGGTATCAGATGACTCCACC 139055
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||| || || |||||||| ||||| ||||||||
Sbjct 139054 TCCAGTGTGATTGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 139008
Score = 163 bits (180), Expect = 6e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || |||| || | ||| || || |||||||||||||| |
Sbjct 138722 ACCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 138663
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || |||||||| || || || || ||||| |||||||| || || |||||| ||
Sbjct 138662 CAGAGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGG 138603
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || || | ||||| ||||| |||| || ||
Sbjct 138602 AATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCCAC 138543
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || || | ||||| ||||| || |||||
Sbjct 138542 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 138495
Score = 147 bits (162), Expect = 5e-30
Identities = 165/221 (75%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| ||||| |||| || | || || || |||||||||||||| |
Sbjct 139007 ACCACCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 138948
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||| ||||| || || || || || ||||| | ||| || |||||| ||
Sbjct 138947 CAGAGTCCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGG 138888
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||| |||||||| | || ||| | ||||| || || || | |||||
Sbjct 138887 GATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGAC 138828
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATA 283092
|| |||||||| ||||| || |||| || || |||| ||
Sbjct 138827 CTCAAGAGTGATGGTCTTGCCGGTCAGGGTTTTGACGACTA 138787
>seq287
Length=39990
Score = 138 bits (152), Expect = 2e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||||| || || ||||||||||| || || || || || ||||||
Sbjct 4477 TTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 4536
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
|| || || || || ||||| ||||||||||| |||||||| | || || | |||
Sbjct 4537 AATCGCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 4596
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| ||||| || | ||||| || || ||||| ||||| ||||||| ||||| |||||
Sbjct 4597 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 4655
>seq219
Length=54288
Score = 109 bits (120), Expect = 1e-18
Identities = 156/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 230191 AGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGG 230250
|||||||| | || ||| | |||||| |||| | |||||||| || | || |||
Sbjct 42678 AGGAGTTCTTGACTGAGGCTCTCCCTTGCGCTCTTCTGGGCATGAACGCCAACCTGATGA 42619
Query 230251 GGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGT 230310
||| || || || || || || |||||| | | || || || || ||||||| | |
Sbjct 42618 AGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTTGTCGCTCTCGGAAACGAGAAGATCT 42559
Query 230311 ATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACT 230370
| || ||| |||||||| | ||||||||| |||||| || || || || ||||
Sbjct 42558 ACAAGTCCTCCAACCCCTTTGACTTTATGGAGAACATTTCTCTGGGCGGCAAGACCAACT 42499
Query 230371 TCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410
||||||| ||||||||| |||| || || | | | |||||
Sbjct 42498 TCTTCGAGAAGCGTGTCGGCGAGTACCAGAAGGCTGGTGT 42459
>seq116
Length=98879
Score = 95.1 bits (104), Expect = 3e-14
Identities = 133/184 (72%), Gaps = 2/184 (1%)
Strand=Plus/Minus
Query 315651 GTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAG 315710
|||| |||| | | || ||||| |||| ||||| || |||| | || |||||| ||
Sbjct 44479 GTGAGTAATGATGATGACACCACCCTCGAACTTCTTCAGGGCCTTGGACAGGGCACCCAG 44420
Query 315711 ACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCA 315770
| || || |||| | ||||||| ||||| ||||| ||||| | ||||||| | |||||
Sbjct 44419 AGAGTCACGATCCAGATAGTTGGTAGGCTCGTCAAGGACGATCAAGTGGGGTCGCTGCCA 44360
Query 315771 TAGAGCG-GCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAG 315829
||||| ||| | | || ||| | || ||||||||||| ||||| |||||||
Sbjct 44359 -AGAGCAAGCGGCCAAGACAGTCTTGACACGCTGACCACCAGACAGACCACGCATGCGAG 44301
Query 315830 AATG 315833
| ||
Sbjct 44300 AGTG 44297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046719901073106
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |