Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5 149 6e-31 seq38 136 4e-27 seq287 114 1e-20 seq111 91.5 1e-13 >seq5 Length=314554 Score = 149 bits (164), Expect = 6e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || || ||||||||| ||||| |||||| Sbjct 52323 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 52382 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||||||||| || ||||| |||| ||||| ||||||| |||| Sbjct 52383 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 52442 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||| ||| | | | |||||| |||||||| Sbjct 52443 ATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACTCCAC 52501 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || ||||| || ||||| || ||||| |||||||||||||| || Sbjct 52502 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 52552 >seq38 Length=159530 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| || || ||| ||||||||| ||||| |||||||| Sbjct 138721 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 138662 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || |||||||||||||||||||| |||| |||||| ||||| | ||| Sbjct 138661 AGAGTCCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGA 138602 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || |||| || | | | |||||| |||||||| Sbjct 138601 ATGCCCTCCTTGTCCTGGATCTTGGACTTC-ACATTGTCGATGGTGTCGGAAGACTCCAC 138543 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || || || || ||||| ||||| || |||||| Sbjct 138542 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 138494 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| || || |||||||||||||| ||||| |||||| Sbjct 139235 GCCACCACGCAGACGGAGAACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 139176 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || |||| || |||||||| || || || || || ||||| ||||| | ||| Sbjct 139175 CAGGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCAGGGGG 139116 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||||||| || | |||| || || | | | || || ||||||| Sbjct 139115 AATACCCTCCTTGTCC-TGGATCTTTGATTTGACATTGTCGATGGTATCAGATGACTCCA 139057 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || || | ||||| ||||| |||||||| Sbjct 139056 CCTCCAGTGTGATTGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 139008 >seq287 Length=39990 Score = 114 bits (126), Expect = 1e-20 Identities = 137/184 (74%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| || ||||| || | || |||||||||||||| ||||| | Sbjct 4475 CCTTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 4534 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| ||||| || |||| ||||| | |||||||||| ||| || ||| || | Sbjct 4535 TCAATCGCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 4594 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | |||||| ||||| ||||| | || || || || |||||||| ||||| || Sbjct 4595 CG--ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 4652 Query 41851 GAAA 41854 |||| Sbjct 4653 GAAA 4656 >seq111 Length=101096 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 || ||||| || || || ||||||||| ||||||| |||||| |||||||| ||| Sbjct 92478 CGAATCGCTCCCCGCTCTGGCCTCGCCTCCAAGCACTTCATCGACACCGGCGCCGGTGTC 92419 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912 || ||||| |||||||||||| ||||| | | ||||||||||||| ||| Sbjct 92418 ATTGACGCAGACTACCGCGGACCCGTCAAGGTTCTCCTCTTCAACCACGCCGA 92366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462295684306800