Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq35 116 8e-21 >seq35 Length=1329723 Score = 116 bits (128), Expect = 8e-21 Identities = 272/405 (67%), Gaps = 4/405 (1%) Strand=Plus/Minus Query 230237 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 230296 ||||||| ||||| ||| | |||| | ||||||||||| | || |||||| ||| Sbjct 994463 CCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCA 994404 Query 230297 TCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAAAGCTCCAG 230355 || ||| |||||||| || || || | | || || | | | || | || || Sbjct 994403 TCTCTCGTGACGAGGGCCTGCA-CACCGACTTTGCTTGCCTGCTCCACTCTCACCTGAAG 994345 Query 230356 AACAA-GCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAA 230414 ||| || | || |||| || ||||||| || || || || || ||| | Sbjct 994344 AACCGCGCCAGCAAG-GAGATTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCA 994286 Query 230415 GGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGG 230474 |||||| | || ||| | || ||| || | ||||||||||| || ||| Sbjct 994285 AGAGTTCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAA 994226 Query 230475 ACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTA 230534 |||||||| || || || ||||| || | | || || ||||| ||||||| | || Sbjct 994225 GCAGTACATTGAGTTTGTTGCCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAGATTTA 994166 Query 230535 CAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTT 230594 ||| || |||||||||| || |||||| ||| || || || ||||||||||| Sbjct 994165 CAAGTCCTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTT 994106 Query 230595 CTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 |||||| ||||||||| | || || |||| | | ||||| ||||| Sbjct 994105 CTTCGAGAAGCGTGTCGGCGAGTACCAGAAGGCCGGTGTCATGAA 994061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057822224508530