Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq35 138 1e-27 >seq35 Length=1329723 Score = 138 bits (152), Expect = 1e-27 Identities = 556/866 (64%), Gaps = 31/866 (4%) Strand=Plus/Plus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 ||||| |||| || || || ||||| ||||| || ||||| | || || || |||||| Sbjct 994079 TGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCC 994138 Query 16736 ATGAAATCAAAAGGATT--AGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 ||||| ||||| || || || | || |||| || | | | || || || ||| | Sbjct 994139 ATGAAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCG--TTGCCAAGAGCGACGAGCA 994196 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 | ||| || ||||| || || || || ||| | | |||||| || | ||| Sbjct 994197 GACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGA- 994255 Query 16854 GTACCGGA-AGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT- 16911 | || || ||||| || ||||| || |||||| || || || || | || || Sbjct 994256 GCACAGGGGAGAGCCTCGGTCAAGAACTCTTGCTCGATTCTGACGGCATCAGTGATGATT 994315 Query 16912 --ACTAGCAA-CTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGC 16968 || || ||| || || | |||| || || || | ||| || || Sbjct 994316 TCACGGATAATCTCCTTGCTGGCGCGGTTC----TTCAGGTGAGAGTGGAGCAGGCAAGC 994371 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 || ||| || | |||||||| | ||| || ||||| || || |||| || || Sbjct 994372 AAAGTCGGTGTGCAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGG 994431 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 ||| |||| ||||| | ||| || || | ||| || | || ||||| ||||| Sbjct 994432 CATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACC 994491 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCA 17148 |||||||| ||||| || | | || | || | | | ||| |||| | ||||| Sbjct 994492 CTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTGGATCCA 994551 Query 17149 TTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA--- 17205 || |||| || || || | |||||| || || || ||||| || || Sbjct 994552 CTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAG 994611 Query 17206 -TAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTT 17264 || || | || |||| | || | | || || |||||||| ||| ||| | | Sbjct 994612 GTAGTTGCGCTGG---CTGT-GCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCT 994667 Query 17265 CGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTT 17324 ||||||| ||||||||||| ||||| || ||||| |||||||| || || | || | Sbjct 994668 CGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCT 994727 Query 17325 GAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGA 17384 |||| || || ||| || || | || || ||||| || ||||||||| || || | Sbjct 994728 GAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAA 994787 Query 17385 AAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG------CC 17438 | || |||| || || ||||| || || ||||| | || ||| || Sbjct 994788 AGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAG---GCGGTTGTTCC 994844 Query 17439 AGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCT 17498 |||| | | ||| ||||| | ||| | ||||||| |||||| || |||| | |||| Sbjct 994845 AGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCT 994904 Query 17499 TTTTATACATATTCCAAATATCATTG 17524 |||| ||||| | ||| || | |||| Sbjct 994905 TTTTGTACATTTGCCAGATCTAATTG 994930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517544752519080