Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq35 331 1e-85 seq44 147 2e-30 seq42 118 1e-21 >seq35 Length=1329723 Score = 331 bits (366), Expect = 1e-85 Identities = 563/808 (70%), Gaps = 15/808 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||||||||||||||| || |||||||||| ||| ||| | || ||| Sbjct 994923 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTG 994864 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | ||||||| | ||| ||||||| ||||| | |||||| Sbjct 994863 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCTCT 994804 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | |||||||| || || ||| ||||||||| ||||||||||| |||||||||||| Sbjct 994803 CACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGAGCGT 994744 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||| | ||||||| || ||||||||||| || |||||| ||| Sbjct 994743 TTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGATG 994684 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928 |||||| | ||||| || | || || ||||||||||| ||||| | || | Sbjct 994683 GAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGCAC--A 994626 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | | | | || | | || |||||||| ||||| || || ||| || ||||||| Sbjct 994625 GCCAGCGCAACTAC--CTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGAAGGC 994568 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 || ||||| | |||||| | || || | |||| | ||||||| || || Sbjct 994567 TGACTGGGCCATCAAGTGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGCCTTGTTGC 994508 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 ||| || ||||||||||| ||||||| || || ||| |||| || |||||||| Sbjct 994507 CTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAA 994448 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| | || |||||||| |||||||| ||| ||||||||||||||| | |||||||| Sbjct 994447 GAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGG 994388 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC 117228 ||||| ||||||||| || |||| | || || | | || | ||| || Sbjct 994387 CCTGCACACCGACTTTGCTTGCCTGCTCCACTCTCACCTGAAGAACCGCGCCAGCAAGGA 994328 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288 | || | || ||| |||| || || ||| |||||||| ||| | ||||| || Sbjct 994327 GATTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCAAGAGTTCTTGACCGAGGC 994268 Query 117289 GCT-GCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTC 117346 || || |||| ||||||||| | || || | | |||| ||| ||||| ||||| Sbjct 994267 TCTCCCCTGTGC-TCTGCTGGGCATGAA-CGCCACCCTGATGAAGCAGTACATTGAGTTT 994210 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 || ||||| | ||||| ||| || | | || ||| ||||| | ||||||| Sbjct 994209 GTTGCCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAGATTTACAAGTCCTCCAACCCC 994150 Query 117407 CTGGACTTTATGAACCTCATCTCCTTGG 117434 | ||||| ||| | ||||||| ||| Sbjct 994149 TTTGACTTCATGGAGAACATCTCCCTGG 994122 >seq44 Length=3047126 Score = 147 bits (162), Expect = 2e-30 Identities = 175/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 1396737 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1396796 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||| ||| |||| Sbjct 1396797 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 1396855 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| ||| | |||| || || || ||||| || || | |||||||| | |||||| Sbjct 1396856 CCAGCAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 1396915 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||||||| |||| || || || || ||||| || | || || ||| Sbjct 1396916 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTGGC 1396970 Score = 131 bits (144), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| || ||||| | || || || | | Sbjct 758261 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACAATCACACTGGAAGTGGAGTCATCT 758202 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| ||| |||| ||||| ||||| |||||| | ||||| Sbjct 758201 GATACCATCGACAACG-TCAAGTCAAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCA 758143 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || || |||||||| |||| |||||||| | ||||||||| Sbjct 758142 GCAGCGCCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAA 758083 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| ||| ||||| Sbjct 758082 CATCCAGAAGGAGAGCACCCTGCA 758059 Score = 125 bits (138), Expect = 7e-24 Identities = 151/203 (74%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 40697 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG 40756 || |||| || || ||||| ||||| ||||||||| |||| || || | |||| | | Sbjct 758482 TAGTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCCGATACCA 758423 Query 40757 TGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815 | | |||| ||||| || || | ||||| ||||| ||||| | |||||||| || Sbjct 758422 TTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGT 758364 Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875 ||||||| || || || ||||| || |||| |||||||| | ||| |||||||||||| Sbjct 758363 CTCATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTGAGCGATTACAACATCCAG 758304 Query 40876 AAGGAGGCCACGCTGCATCTAGT 40898 |||||| | || || || || || Sbjct 758303 AAGGAGTCTACCCTCCACCTTGT 758281 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| ||||||||| |||| || || | || Sbjct 758769 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 758710 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| || || | ||||| |||||||| || | |||||| Sbjct 758709 GACACTATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 758650 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| || || || || | || || || |||||||||| Sbjct 758649 CAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 758590 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 758589 ATCCAGAAGGAGTCCACCCTCCACCTGGT 758561 >seq42 Length=797865 Score = 118 bits (130), Expect = 1e-21 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 40688 AAATGCAAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 |||||| || | ||||| || || || |||||||| ||||||||| | || ||||| | Sbjct 706196 AAATGCGAAAAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTC 706137 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||||| | | | ||||| || || | ||||| ||||| |||||| |||| Sbjct 706136 CTCCGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGA 706077 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| ||| | |||| ||| ||||| ||||| || || | || ||||| ||||| Sbjct 706076 TCAGCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTGTCTGACTA 706017 Query 40866 CAACATCCAGAAGG 40879 |||||||||||||| Sbjct 706016 CAACATCCAGAAGG 706003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218356328560