Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq35 331 1e-85
seq44 147 2e-30
seq42 118 1e-21
>seq35
Length=1329723
Score = 331 bits (366), Expect = 1e-85
Identities = 563/808 (70%), Gaps = 15/808 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||||||||||||||| || |||||||||| ||| ||| | || |||
Sbjct 994923 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTG 994864
Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
|||||||| | ||||||| | ||| ||||||| ||||| | ||||||
Sbjct 994863 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCTCT 994804
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||| | |||||||| || || ||| ||||||||| ||||||||||| ||||||||||||
Sbjct 994803 CACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGAGCGT 994744
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| ||||| ||| | ||||||| || ||||||||||| || |||||| |||
Sbjct 994743 TTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGATG 994684
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928
|||||| | ||||| || | || || ||||||||||| ||||| | || |
Sbjct 994683 GAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGCAC--A 994626
Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988
| | | | || | | || |||||||| ||||| || || ||| || |||||||
Sbjct 994625 GCCAGCGCAACTAC--CTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGAAGGC 994568
Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048
|| ||||| | |||||| | || || | |||| | ||||||| || ||
Sbjct 994567 TGACTGGGCCATCAAGTGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGCCTTGTTGC 994508
Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108
||| || ||||||||||| ||||||| || || ||| |||| || ||||||||
Sbjct 994507 CTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAA 994448
Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168
||| | || |||||||| |||||||| ||| ||||||||||||||| | ||||||||
Sbjct 994447 GAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGG 994388
Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC 117228
||||| ||||||||| || |||| | || || | | || | ||| ||
Sbjct 994387 CCTGCACACCGACTTTGCTTGCCTGCTCCACTCTCACCTGAAGAACCGCGCCAGCAAGGA 994328
Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288
| || | || ||| |||| || || ||| |||||||| ||| | ||||| ||
Sbjct 994327 GATTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCAAGAGTTCTTGACCGAGGC 994268
Query 117289 GCT-GCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTC 117346
|| || |||| ||||||||| | || || | | |||| ||| ||||| |||||
Sbjct 994267 TCTCCCCTGTGC-TCTGCTGGGCATGAA-CGCCACCCTGATGAAGCAGTACATTGAGTTT 994210
Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406
|| ||||| | ||||| ||| || | | || ||| ||||| | |||||||
Sbjct 994209 GTTGCCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAGATTTACAAGTCCTCCAACCCC 994150
Query 117407 CTGGACTTTATGAACCTCATCTCCTTGG 117434
| ||||| ||| | ||||||| |||
Sbjct 994149 TTTGACTTCATGGAGAACATCTCCCTGG 994122
>seq44
Length=3047126
Score = 147 bits (162), Expect = 2e-30
Identities = 175/235 (74%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || |||||||| || || |||||| | || || || |
Sbjct 1396737 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1396796
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
|||||| | | | |||| ||||| || || | ||||| |||||||| ||| ||||
Sbjct 1396797 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 1396855
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| ||| | |||| || || || ||||| || || | |||||||| | ||||||
Sbjct 1396856 CCAGCAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 1396915
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920
|||||||||||||||| |||| || || || || ||||| || | || || |||
Sbjct 1396916 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTGGC 1396970
Score = 131 bits (144), Expect = 2e-25
Identities = 153/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || | || ||||| || ||||| | || || || | |
Sbjct 758261 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACAATCACACTGGAAGTGGAGTCATCT 758202
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| ||||| ||| |||| ||||| ||||| |||||| | |||||
Sbjct 758201 GATACCATCGACAACG-TCAAGTCAAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCA 758143
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||||| ||| || || |||||||| |||| |||||||| | |||||||||
Sbjct 758142 GCAGCGCCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAA 758083
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
||||||||||||| ||| |||||
Sbjct 758082 CATCCAGAAGGAGAGCACCCTGCA 758059
Score = 125 bits (138), Expect = 7e-24
Identities = 151/203 (74%), Gaps = 2/203 (1%)
Strand=Plus/Minus
Query 40697 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG 40756
|| |||| || || ||||| ||||| ||||||||| |||| || || | |||| | |
Sbjct 758482 TAGTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCCGATACCA 758423
Query 40757 TGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815
| | |||| ||||| || || | ||||| ||||| ||||| | |||||||| ||
Sbjct 758422 TTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGT 758364
Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875
||||||| || || || ||||| || |||| |||||||| | ||| ||||||||||||
Sbjct 758363 CTCATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTGAGCGATTACAACATCCAG 758304
Query 40876 AAGGAGGCCACGCTGCATCTAGT 40898
|||||| | || || || || ||
Sbjct 758303 AAGGAGTCTACCCTCCACCTTGT 758281
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| ||||| ||||||||| |||| || || | ||
Sbjct 758769 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 758710
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||| || || | ||||| |||||||| || | ||||||
Sbjct 758709 GACACTATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 758650
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||| ||||| || || || || | || || || ||||||||||
Sbjct 758649 CAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 758590
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| |||| || || || ||
Sbjct 758589 ATCCAGAAGGAGTCCACCCTCCACCTGGT 758561
>seq42
Length=797865
Score = 118 bits (130), Expect = 1e-21
Identities = 143/194 (74%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 40688 AAATGCAAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745
|||||| || | ||||| || || || |||||||| ||||||||| | || ||||| |
Sbjct 706196 AAATGCGAAAAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTC 706137
Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| |||||| | | | ||||| || || | ||||| ||||| |||||| ||||
Sbjct 706136 CTCCGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGA 706077
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
||||| ||| | |||| ||| ||||| ||||| || || | || ||||| |||||
Sbjct 706076 TCAGCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTGTCTGACTA 706017
Query 40866 CAACATCCAGAAGG 40879
||||||||||||||
Sbjct 706016 CAACATCCAGAAGG 706003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218356328560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |