Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq44 123 3e-23
>seq44
Length=3047126
Score = 123 bits (136), Expect = 3e-23
Identities = 157/211 (74%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
||||| |||| ||||||||||| || || ||||| || ||| || || |||| ||
Sbjct 758053 ACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCC 758112
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
||||||||||||||||| ||||| ||||||||||| | || | | |||||||||| ||
Sbjct 758113 AGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCC-TG 758171
Query 43095 ATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152
| | |||| |||| ||| | | | || || || ||||| || | ||||| || |
Sbjct 758172 AATCTTTGACTTGA-CGTTGTCGATGGTATCAGATGACTCCACTTCCAGTGTGATTGTCT 758230
Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||| || | ||||| |||||||| |||||
Sbjct 758231 TGCCGGTCAAAGTCTTGACAAAGATCTGCAT 758261
Score = 113 bits (124), Expect = 5e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | |||||| || | || || || ||||| ||||||||
Sbjct 758578 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAA 758637
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||| | || | || |||||||||| ||| || || | |
Sbjct 758638 GATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATT 758697
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | |||||| || ||||| |||| |||||||| ||||| || || ||||| ||
Sbjct 758698 GTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 758757
Query 43172 AAAGATTTGCAT 43183
|||||||||||
Sbjct 758758 GAAGATTTGCAT 758769
Score = 107 bits (118), Expect = 2e-18
Identities = 134/181 (74%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || |||||||| ||| || || |||| || |||||||||||||| ||
Sbjct 758298 CTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCAAA 758357
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||||| || | | |||||||||| ||| || |||| |||
Sbjct 758358 GATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 758416
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | || ||| || ||||| |||| |||||||| ||||| || || ||||| |
Sbjct 758417 TGTCAATGGTATCGGATGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGA 758476
Query 43171 C 43171
|
Sbjct 758477 C 758477
Score = 100 bits (110), Expect = 3e-16
Identities = 155/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| |||| || | ||| |||||| || || ||||| || ||| || || |
Sbjct 1396954 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 1396895
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||||||||| || || | |||||||||||| | || | || |||||||
Sbjct 1396894 TCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 1396835
Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
||| ||| || |||| ||| | | | |||||| || ||||| || | |||||
Sbjct 1396834 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 1396776
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
|| || ||||| || ||||| || || || ||||| ||
Sbjct 1396775 CGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 1396737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571816663648680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |