Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq66 325 4e-84
seq35 188 6e-43
seq44 109 5e-19
>seq66
Length=2244893
Score = 325 bits (360), Expect = 4e-84
Identities = 1216/1886 (64%), Gaps = 31/1886 (2%)
Strand=Plus/Plus
Query 22104 TCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162
||||| || ||||| ||||| || | || || | | ||| || || || ||||||
Sbjct 1019823 TCTTGATCAACTGTGAACTGGATAGGTGCAGCCGCAGCCTGGGTACGCAGGTAGTACATG 1019882
Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT--CCATAAC 22220
|| ||||| ||||| | |||||| | || || || || ||| || ||||
Sbjct 1019883 CCAGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGT-AATCTTGCCCATTG- 1019940
Query 22221 TCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGG 22280
| || | ||||| | || || ||||| |||||| || || || || || ||||
Sbjct 1019941 TGGGATCCTTCATGTGGATGTTCAAGGACTGGGACTGATCAATGAAAGCACCACGGTCGG 1020000
Query 22281 CGGCCATATTTATCAATGTA-CGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTG 22339
| | ||| | | | |||| ||| || || ||||| || ||||||||||| | ||
Sbjct 1020001 CTGACATCTGGA-CGATGTGGCGCTGAGAGATCTCCCAAACAGTCTTGTACAGGGCCTTG 1020059
Query 22340 ATCTCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATTGTGTATGATCAAATT 22398
|| || || || | | || | |||||| || ||||| | ||||| ||
Sbjct 1020060 ATGTCGGCGGGAAT-GTTGGGAATGTTCTGGATAGAACCGTTCTCAGCAATGATGCGGTT 1020118
Query 22399 TTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCAC 22458
|| || | |||| ||| | || | || | ||| |||| || |||| ||
Sbjct 1020119 CTTCATAGCATCGGACCAGAGGCCAGTATCGACAAGATCCTTGAGAAGCCAGGGGTTGAC 1020178
Query 22459 CACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAA 22518
|| || |||||||| | | ||| || || ||||| |||||||| ||| | || |||||
Sbjct 1020179 AACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAA 1020238
Query 22519 AGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAG 22578
|||||||||| ||||| ||||| | || || || ||||| || || | || |
Sbjct 1020239 GCATTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCAA 1020298
Query 22579 CGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATC 22638
||| | | ||||||| ||| | ||||||| ||| |||||||| ||
Sbjct 1020299 ACTGTTGCGAATACCGTGCTCCTTAATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTC 1020358
Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGG-GCTGC 22697
| ||| | |||| |||||| || | || | | ||| | || || | | |
Sbjct 1020359 AGTGGGCTTGACAT---CCCACAAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGATCC 1020415
Query 22698 CTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGC-AGCTCGCCTCCAACGCG 22756
||| | | | || || ||||| | ||| ||||| || || | ||||| | ||
Sbjct 1020416 CTT-GAATGACTCATAAGGACCCTCGATCTTGGCAATCTCCATAGAT-GCCTCGAGGGCA 1020473
Query 22757 CCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTAC 22816
||| || || ||||| ||||||| ||||||||| ||| || || |||| |
Sbjct 1020474 GCGTGGTAGATGGTCTCAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTGATTCGAAA 1020533
Query 22817 GGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGG 22876
|| | ||||| | ||| ||||| || | ||||||||| || | ||| || ||||||
Sbjct 1020534 GGAAGACGCAGAGCGAGGAAAGCGTCAGCAAGACCCTGAACACCAACACCAATGGGTCGG 1020593
Query 22877 TTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACCAATTCGAATCGATTGT 22932
| | | | | ||| |||| ||| | | || || | ||| |||||| |
Sbjct 1020594 TGG--CGGCT--GTTACTGTTGCGAGCCTCCTGAACGGGGTAGTAGTTCACATCGATGAT 1020649
Query 22933 TCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC 22992
| ||| | ||| | | || | || || | | |||||| ||
Sbjct 1020650 GCGGTTGAGGTTACGGACAACCACCTTGGTAACATCGTGAAGCTTCTTAAAGTCATAGCA 1020709
Query 22993 GCC--CGATTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCA 23048
||| || || || | ||||| || || | ||||| | ||||| || || |
Sbjct 1020710 GCCTTCG-TTATAGTCGACAAAGGCAGGGAGAGCCAAAGAGGCCAAGTTGCAGACAGCGA 1020768
Query 23049 CCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGC 23108
||||||| || | |||||| || || || || || || ||| | || || |
Sbjct 1020769 CCTCGTCAGGGGCAGAGTACTCAACGATCTCAGTGCAGAGGTTGGAGCTTCGGATGGTTC 1020828
Query 23109 CCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGC 23168
||| || |||||||||| || || ||||| | ||||||||| ||||| | || | |
Sbjct 1020829 CCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATAAAGGGGTTAC 1020888
Query 23169 CCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCA 23228
| ||||| ||| | ||| | ||| | ||||| ||||||| | | | |||
Sbjct 1020889 CAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCTTCTGAGCTCGGATA-GTCTTG 1020947
Query 23229 CGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAG 23287
|| ||| ||| || | ||||||||| | |||| || || ||||| | || || |||
Sbjct 1020948 CGACCCTTGCCCTCCTTCTCGTACTTCTCATACAGAGCCTCGAATTCTTCGCCATAGCAG 1021007
Query 23288 TCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACG 23347
|| || ||||| || ||| | || ||||| | | |||| ||| || |||||
Sbjct 1021008 TCAGCAAGGCCAGGGCATTCGTTGGGGCACATCAAAGTCCAGTCCAAGTTCTTCTCAACA 1021067
Query 23348 CGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCC 23407
|| |||| || ||||| || ||||| |||||| |||||| || ||||| || |||||
Sbjct 1021068 CGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCT 1021127
Query 23408 TCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCG 23467
|| |||||| |||||| | || | || || || || || || ||||| ||||||
Sbjct 1021128 TCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCG 1021187
Query 23468 AGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTG 23527
||||| | |||||| || || || | ||| ||||| ||||| |||||||| | ||| |||
Sbjct 1021188 AGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTG 1021247
Query 23528 TTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACA 23587
|||||| | |||| ||||| || | || ||||||||| | ||| ||| || |
Sbjct 1021248 TTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATG 1021307
Query 23588 CTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGAT 23647
|| || | || || | ||| |||| | || || || || || || ||
Sbjct 1021308 TAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTGGAA 1021367
Query 23648 ATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCG 23707
||||| || ||| || |||||||||||||| ||||| |||||||| || || | |
Sbjct 1021368 ATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCC 1021427
Query 23708 ACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTG 23767
|||| ||| || || |||| || |||| || ||| | || ||| || || || |
Sbjct 1021428 ACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAG 1021487
Query 23768 GCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCC 23827
|| || |||||| || | ||||| || | ||| || || | | | |||||||
Sbjct 1021488 GCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTG 1021547
Query 23828 TCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACG 23887
||||| | || | || || ||||| ||||||| || |||| ||| || | |
Sbjct 1021548 TCTCCCCAAACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTG 1021607
Query 23888 CCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTA 23947
|| | || || | |||||||| || | || || || || || || || | |||||
Sbjct 1021608 CCATCAAGCTTCAGGAGATATGACCGCTCCAGTGTCTTGAAGCCGAAGTATTGGTAGTTG 1021667
Query 23948 AAGTCACGATCGTGCACTATGGCCGA 23973
||||| || |||| || ||||| ||
Sbjct 1021668 AAGTCTCGGTCGTAGACAATGGCAGA 1021693
>seq35
Length=1329723
Score = 188 bits (208), Expect = 6e-43
Identities = 492/735 (67%), Gaps = 29/735 (4%)
Strand=Plus/Minus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||||||||| || || || || ||||||| |||||| | || |||
Sbjct 994923 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTG 994864
Query 57630 TCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGA-GAGAA--ATTTTATT 57683
|| ||||||||| ||| ||| | ||| || || ||| ||||| | || ||
Sbjct 994863 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGACGAGAAGTACTTCATC 994807
Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743
||| | |||| || || || || ||||| || ||||| |||||||| ||||||
Sbjct 994806 TCTCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCG-- 994749
Query 57744 AGATTTTCA--CAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGG 57801
|| ||||| || || || | | ||||| ||||||| ||||| || || |
Sbjct 994748 AGCGTTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCA 994689
Query 57802 CCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACA 57861
|| || ||| | || || || | || || || |||||||| || ||||| |||||
Sbjct 994688 TGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGC 994629
Query 57862 ACGAC--GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAA 57919
|| | | | ||| || || |||||||| || || || || || ||| |||||
Sbjct 994628 ACAGCCAGCGCAAC-TA-CCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGAA 994571
Query 57920 GGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCT 57976
||| || ||| | ||||| ||||| | | || || | | || || || | ||
Sbjct 994570 GGCTGACTGGGCCATCAAGTGGATCCA---GGACAAGGACTCTTCCTTTGCTCAGCGCCT 994514
Query 57977 AATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTG 58036
| || || || |||||||| ||||| ||||| || |||||| | || || ||
Sbjct 994513 TGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTG 994454
Query 58037 GATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGA 58096
| | ||||| | || || ||||| |||||||| || ||||||| | || || || ||
Sbjct 994453 GCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGA 994394
Query 58097 CGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC-CGA 58155
|||||| || || || || ||||| ||||| | |||||||| | || || | ||
Sbjct 994393 CGAGGGCCTGCACACCGACTTTGCTTGCCTGCTCCACTCTCAC---CTGAAGAACCGCGC 994337
Query 58156 C-GC-GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGT 58213
| || ||| ||| || || ||||| || || ||| ||||| | ||||| |
Sbjct 994336 CAGCAAGGAGATTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCAAGAGTTCTT 994277
Query 58214 CACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACAT 58273
||||| || || || || |||| || |||||| ||||| |||||||
Sbjct 994276 GACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACAT 994217
Query 58274 TGAGTTTGTTGCCGA 58288
|||||||||||||||
Sbjct 994216 TGAGTTTGTTGCCGA 994202
>seq44
Length=3047126
Score = 109 bits (120), Expect = 5e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| ||||| ||||| || || ||||| || |||||| |||| || || | ||
Sbjct 758770 CATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTC 758711
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| | |||| | || || | || ||||||||| ||| | || || |||||
Sbjct 758710 CGACACTATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCA 758651
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||||||| || ||||||||||| || | || || ||| || ||| || ||
Sbjct 758650 GCAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAA 758591
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || || || || || ||||| ||
Sbjct 758590 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 758558
Score = 102 bits (112), Expect = 7e-17
Identities = 154/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262
|||| |||||||| || ||||| || |||||| |||| || || | ||||| | | |
Sbjct 758479 TCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCCGATACCATTG 758420
Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322
| | ||||| | || ||||||||| || | || ||||||||||||||||| |
Sbjct 758419 ACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTCA 758360
Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382
| || ||||| || ||| | || ||| | || |||||||||| ||||| || || |
Sbjct 758359 TCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTGAGCGATTACAACATCCAGAAGG 758300
Query 31383 AATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
| || || || || || || ||| | || | || ||||
Sbjct 758299 AGTCTACCCTCCACCTTGTCCTTCGTCTTCGTGGTGGTA 758261
Score = 98.7 bits (108), Expect = 9e-16
Identities = 167/242 (69%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| || || || || ||||||||| | || || || |
Sbjct 1396737 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1396796
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||||| |||| | ||||| | || ||||||||| ||| | || || |||
Sbjct 1396797 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 1396856
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||||| | || || ||||| || ||| | || || || ||||||| ||
Sbjct 1396857 CAGCAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 1396916
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAG 31425
||||| || || || || || || || ||||| || | ||| | || ||| |||||
Sbjct 1396917 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTGGCAAGAAG 1396976
Query 31426 CG 31427
||
Sbjct 1396977 CG 1396978
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || |||||| |||| ||||| || ||||| | || || || | ||
Sbjct 758261 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACAATCACACTGGAAGTGGAGTCATCT 758202
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | |||| | ||||| || ||| | ||||||||| || | || || |||||
Sbjct 758201 GATACCATCGACAACGTCAAGTCAAAGATTCA-GGACAAGGAGGGTATCCCCCCTGACCA 758143
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| || || |||||||| || ||| |||||||| | || ||||||| || ||
Sbjct 758142 GCAGCGCCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAA 758083
Query 31372 CATTCAAAAAGA 31383
||| || || ||
Sbjct 758082 CATCCAGAAGGA 758071
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445765670057520
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