Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq66 325 4e-84 seq35 188 6e-43 seq44 109 5e-19 >seq66 Length=2244893 Score = 325 bits (360), Expect = 4e-84 Identities = 1216/1886 (64%), Gaps = 31/1886 (2%) Strand=Plus/Plus Query 22104 TCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||||| || ||||| ||||| || | || || | | ||| || || || |||||| Sbjct 1019823 TCTTGATCAACTGTGAACTGGATAGGTGCAGCCGCAGCCTGGGTACGCAGGTAGTACATG 1019882 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT--CCATAAC 22220 || ||||| ||||| | |||||| | || || || || ||| || |||| Sbjct 1019883 CCAGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGT-AATCTTGCCCATTG- 1019940 Query 22221 TCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGG 22280 | || | ||||| | || || ||||| |||||| || || || || || |||| Sbjct 1019941 TGGGATCCTTCATGTGGATGTTCAAGGACTGGGACTGATCAATGAAAGCACCACGGTCGG 1020000 Query 22281 CGGCCATATTTATCAATGTA-CGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTG 22339 | | ||| | | | |||| ||| || || ||||| || ||||||||||| | || Sbjct 1020001 CTGACATCTGGA-CGATGTGGCGCTGAGAGATCTCCCAAACAGTCTTGTACAGGGCCTTG 1020059 Query 22340 ATCTCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATTGTGTATGATCAAATT 22398 || || || || | | || | |||||| || ||||| | ||||| || Sbjct 1020060 ATGTCGGCGGGAAT-GTTGGGAATGTTCTGGATAGAACCGTTCTCAGCAATGATGCGGTT 1020118 Query 22399 TTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCAC 22458 || || | |||| ||| | || | || | ||| |||| || |||| || Sbjct 1020119 CTTCATAGCATCGGACCAGAGGCCAGTATCGACAAGATCCTTGAGAAGCCAGGGGTTGAC 1020178 Query 22459 CACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAA 22518 || || |||||||| | | ||| || || ||||| |||||||| ||| | || ||||| Sbjct 1020179 AACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAA 1020238 Query 22519 AGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAG 22578 |||||||||| ||||| ||||| | || || || ||||| || || | || | Sbjct 1020239 GCATTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCAA 1020298 Query 22579 CGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATC 22638 ||| | | ||||||| ||| | ||||||| ||| |||||||| || Sbjct 1020299 ACTGTTGCGAATACCGTGCTCCTTAATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTC 1020358 Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGG-GCTGC 22697 | ||| | |||| |||||| || | || | | ||| | || || | | | Sbjct 1020359 AGTGGGCTTGACAT---CCCACAAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGATCC 1020415 Query 22698 CTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGC-AGCTCGCCTCCAACGCG 22756 ||| | | | || || ||||| | ||| ||||| || || | ||||| | || Sbjct 1020416 CTT-GAATGACTCATAAGGACCCTCGATCTTGGCAATCTCCATAGAT-GCCTCGAGGGCA 1020473 Query 22757 CCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTAC 22816 ||| || || ||||| ||||||| ||||||||| ||| || || |||| | Sbjct 1020474 GCGTGGTAGATGGTCTCAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTGATTCGAAA 1020533 Query 22817 GGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGG 22876 || | ||||| | ||| ||||| || | ||||||||| || | ||| || |||||| Sbjct 1020534 GGAAGACGCAGAGCGAGGAAAGCGTCAGCAAGACCCTGAACACCAACACCAATGGGTCGG 1020593 Query 22877 TTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACCAATTCGAATCGATTGT 22932 | | | | | ||| |||| ||| | | || || | ||| |||||| | Sbjct 1020594 TGG--CGGCT--GTTACTGTTGCGAGCCTCCTGAACGGGGTAGTAGTTCACATCGATGAT 1020649 Query 22933 TCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC 22992 | ||| | ||| | | || | || || | | |||||| || Sbjct 1020650 GCGGTTGAGGTTACGGACAACCACCTTGGTAACATCGTGAAGCTTCTTAAAGTCATAGCA 1020709 Query 22993 GCC--CGATTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCA 23048 ||| || || || | ||||| || || | ||||| | ||||| || || | Sbjct 1020710 GCCTTCG-TTATAGTCGACAAAGGCAGGGAGAGCCAAAGAGGCCAAGTTGCAGACAGCGA 1020768 Query 23049 CCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGC 23108 ||||||| || | |||||| || || || || || || ||| | || || | Sbjct 1020769 CCTCGTCAGGGGCAGAGTACTCAACGATCTCAGTGCAGAGGTTGGAGCTTCGGATGGTTC 1020828 Query 23109 CCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGC 23168 ||| || |||||||||| || || ||||| | ||||||||| ||||| | || | | Sbjct 1020829 CCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATAAAGGGGTTAC 1020888 Query 23169 CCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCA 23228 | ||||| ||| | ||| | ||| | ||||| ||||||| | | | ||| Sbjct 1020889 CAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCTTCTGAGCTCGGATA-GTCTTG 1020947 Query 23229 CGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAG 23287 || ||| ||| || | ||||||||| | |||| || || ||||| | || || ||| Sbjct 1020948 CGACCCTTGCCCTCCTTCTCGTACTTCTCATACAGAGCCTCGAATTCTTCGCCATAGCAG 1021007 Query 23288 TCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACG 23347 || || ||||| || ||| | || ||||| | | |||| ||| || ||||| Sbjct 1021008 TCAGCAAGGCCAGGGCATTCGTTGGGGCACATCAAAGTCCAGTCCAAGTTCTTCTCAACA 1021067 Query 23348 CGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCC 23407 || |||| || ||||| || ||||| |||||| |||||| || ||||| || ||||| Sbjct 1021068 CGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCT 1021127 Query 23408 TCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCG 23467 || |||||| |||||| | || | || || || || || || ||||| |||||| Sbjct 1021128 TCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCG 1021187 Query 23468 AGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTG 23527 ||||| | |||||| || || || | ||| ||||| ||||| |||||||| | ||| ||| Sbjct 1021188 AGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTG 1021247 Query 23528 TTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACA 23587 |||||| | |||| ||||| || | || ||||||||| | ||| ||| || | Sbjct 1021248 TTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATG 1021307 Query 23588 CTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGAT 23647 || || | || || | ||| |||| | || || || || || || || Sbjct 1021308 TAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTGGAA 1021367 Query 23648 ATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCG 23707 ||||| || ||| || |||||||||||||| ||||| |||||||| || || | | Sbjct 1021368 ATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCC 1021427 Query 23708 ACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTG 23767 |||| ||| || || |||| || |||| || ||| | || ||| || || || | Sbjct 1021428 ACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAG 1021487 Query 23768 GCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCC 23827 || || |||||| || | ||||| || | ||| || || | | | ||||||| Sbjct 1021488 GCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTG 1021547 Query 23828 TCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACG 23887 ||||| | || | || || ||||| ||||||| || |||| ||| || | | Sbjct 1021548 TCTCCCCAAACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTG 1021607 Query 23888 CCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTA 23947 || | || || | |||||||| || | || || || || || || || | ||||| Sbjct 1021608 CCATCAAGCTTCAGGAGATATGACCGCTCCAGTGTCTTGAAGCCGAAGTATTGGTAGTTG 1021667 Query 23948 AAGTCACGATCGTGCACTATGGCCGA 23973 ||||| || |||| || ||||| || Sbjct 1021668 AAGTCTCGGTCGTAGACAATGGCAGA 1021693 >seq35 Length=1329723 Score = 188 bits (208), Expect = 6e-43 Identities = 492/735 (67%), Gaps = 29/735 (4%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||||||||| || || || || ||||||| |||||| | || ||| Sbjct 994923 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTG 994864 Query 57630 TCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGA-GAGAA--ATTTTATT 57683 || ||||||||| ||| ||| | ||| || || ||| ||||| | || || Sbjct 994863 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGACGAGAAGTACTTCATC 994807 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 ||| | |||| || || || || ||||| || ||||| |||||||| |||||| Sbjct 994806 TCTCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCG-- 994749 Query 57744 AGATTTTCA--CAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGG 57801 || ||||| || || || | | ||||| ||||||| ||||| || || | Sbjct 994748 AGCGTTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCA 994689 Query 57802 CCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACA 57861 || || ||| | || || || | || || || |||||||| || ||||| ||||| Sbjct 994688 TGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGC 994629 Query 57862 ACGAC--GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAA 57919 || | | | ||| || || |||||||| || || || || || ||| ||||| Sbjct 994628 ACAGCCAGCGCAAC-TA-CCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGAA 994571 Query 57920 GGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCT 57976 ||| || ||| | ||||| ||||| | | || || | | || || || | || Sbjct 994570 GGCTGACTGGGCCATCAAGTGGATCCA---GGACAAGGACTCTTCCTTTGCTCAGCGCCT 994514 Query 57977 AATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTG 58036 | || || || |||||||| ||||| ||||| || |||||| | || || || Sbjct 994513 TGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTG 994454 Query 58037 GATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGA 58096 | | ||||| | || || ||||| |||||||| || ||||||| | || || || || Sbjct 994453 GCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGA 994394 Query 58097 CGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC-CGA 58155 |||||| || || || || ||||| ||||| | |||||||| | || || | || Sbjct 994393 CGAGGGCCTGCACACCGACTTTGCTTGCCTGCTCCACTCTCAC---CTGAAGAACCGCGC 994337 Query 58156 C-GC-GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGT 58213 | || ||| ||| || || ||||| || || ||| ||||| | ||||| | Sbjct 994336 CAGCAAGGAGATTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCAAGAGTTCTT 994277 Query 58214 CACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACAT 58273 ||||| || || || || |||| || |||||| ||||| ||||||| Sbjct 994276 GACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACAT 994217 Query 58274 TGAGTTTGTTGCCGA 58288 ||||||||||||||| Sbjct 994216 TGAGTTTGTTGCCGA 994202 >seq44 Length=3047126 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || ||||| || |||||| |||| || || | || Sbjct 758770 CATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTC 758711 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | |||| | || || | || ||||||||| ||| | || || ||||| Sbjct 758710 CGACACTATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCA 758651 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||| || | || || ||| || ||| || || Sbjct 758650 GCAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAA 758591 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || ||||| || Sbjct 758590 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 758558 Score = 102 bits (112), Expect = 7e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| |||||||| || ||||| || |||||| |||| || || | ||||| | | | Sbjct 758479 TCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCCGATACCATTG 758420 Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322 | | ||||| | || ||||||||| || | || ||||||||||||||||| | Sbjct 758419 ACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTCA 758360 Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382 | || ||||| || ||| | || ||| | || |||||||||| ||||| || || | Sbjct 758359 TCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTGAGCGATTACAACATCCAGAAGG 758300 Query 31383 AATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | || || || || || || ||| | || | || |||| Sbjct 758299 AGTCTACCCTCCACCTTGTCCTTCGTCTTCGTGGTGGTA 758261 Score = 98.7 bits (108), Expect = 9e-16 Identities = 167/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| | || || || | Sbjct 1396737 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1396796 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 1396797 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 1396856 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| | || || ||||| || ||| | || || || ||||||| || Sbjct 1396857 CAGCAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 1396916 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAG 31425 ||||| || || || || || || || ||||| || | ||| | || ||| ||||| Sbjct 1396917 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTGGCAAGAAG 1396976 Query 31426 CG 31427 || Sbjct 1396977 CG 1396978 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||| |||| ||||| || ||||| | || || || | || Sbjct 758261 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACAATCACACTGGAAGTGGAGTCATCT 758202 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | ||||| || ||| | ||||||||| || | || || ||||| Sbjct 758201 GATACCATCGACAACGTCAAGTCAAAGATTCA-GGACAAGGAGGGTATCCCCCCTGACCA 758143 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || |||||||| || ||| |||||||| | || ||||||| || || Sbjct 758142 GCAGCGCCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAA 758083 Query 31372 CATTCAAAAAGA 31383 ||| || || || Sbjct 758082 CATCCAGAAGGA 758071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765670057520