Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq35 152 1e-31 seq66 150 4e-31 >seq35 Length=1329723 Score = 152 bits (168), Expect = 1e-31 Identities = 301/442 (68%), Gaps = 9/442 (2%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||||||||||||||| || || || |||||||| || || || || || ||||| |||| Sbjct 994514 TTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCT 994455 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| || ||| | ||||||| || |||| |||||| ||| |||| ||| | | Sbjct 994454 GGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTG 994395 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC- 102094 |||| || || || ||||||||| ||| |||| | || || ||| Sbjct 994394 ACGAGGGCCTGCACACCGACTTTGCTTGCCTGCT----CCACTCTCACCTGAAGA-ACCG 994340 Query 102095 --CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAAT 102152 ||| |||| || | || | |||||| ||||||| |||||| |||| || ||||| | Sbjct 994339 CGCCAGCAAG-GAGATTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCAAGAGT 994281 Query 102153 TTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212 | | || | | || || | | |||| |||||| || |||||| |||| Sbjct 994280 TCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAGCAGT 994221 Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATG 102272 ||||||| ||||| || ||| || | || | | || || ||| || || Sbjct 994220 ACATTGAGTTTGTTGCCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAGATTTACAAGT 994161 Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG 102332 |||||||||| |||||||| || || ||||| | ||||||||||| || | Sbjct 994160 CCTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCG 994101 Query 102333 AAAAGAGAGTCGCCGAGTATCA 102354 | ||| | |||| |||||| || Sbjct 994100 AGAAGCGTGTCGGCGAGTACCA 994079 >seq66 Length=2244893 Score = 150 bits (166), Expect = 4e-31 Identities = 432/657 (66%), Gaps = 12/657 (2%) Strand=Plus/Plus Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451 ||| ||||| || ||| || ||||| |||| |||| || |||||||||| | ||| Sbjct 1020950 ACCCTTGCCCTCCTTCTCGTACTTCTCATACAGAGCCTCGAATTCTTCGCCATAGCAGTC 1021009 Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGC-CTTC---A 94507 | |||||||||||| |||| ||||||||||| | ||| | || || |||| | Sbjct 1021010 AGCAAGGCCAGGGCATTCGTTGGGGCACATCAAAGTCCAGT----CCAAGTTCTTCTCAA 1021065 Query 94508 CTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAAT 94567 | | || |||||| ||||||| | ||||| ||| |||| || || | | | | | Sbjct 1021066 CACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCT 1021125 Query 94568 CTTCATTACCGGCATTCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATCAG 94627 |||| || ||| ||||| | | ||||| || || || || |||||| Sbjct 1021126 CTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCT 1021185 Query 94628 AAATATAGATGGCTGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAG 94687 | |||||||| || || | ||||| || |||||| || | | | ||| Sbjct 1021186 CGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAG 1021245 Query 94688 AGACGTTAAAGATTTGGAGGAACGCCATGAGACCAGGGTGGGTACCACTCCATGACGA-A 94746 | ||| |||| | | || | | |||| ||| | |||||| | || || | Sbjct 1021246 TGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGG-TGCCGGCA 1021304 Query 94747 ATGGGGCTTCCTTTTGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTG 94806 ||| || | || | | | || | || | ||||| || ||||| ||||| Sbjct 1021305 ATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTG 1021364 Query 94807 GAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGG 94866 || || || || ||| ||||| || || |||||||||||||| || || | | | Sbjct 1021365 GAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATG 1021424 Query 94867 CCCAGAAGGAAGCACGAGGAAAGTTG-GGGTGTGACTGTTCCACAATTAAACAGTGTGGG 94925 ||| |||||||| ||||| || || | |||| || ||| || || || ||||| Sbjct 1021425 TCCACCAGGAAGCATGAGGACAGCTGAGCTTGTG-GGGTACCAGCGTTGAAGAGGGTGGG 1021483 Query 94926 GGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGAT 94985 || ||||||||||| | | || |||||||| | ||||| |||| |||| | || Sbjct 1021484 AGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGCTCAAT 1021543 Query 94986 GTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 || ||| || ||| |||||||||||||||||||||| ||| || |||||||| Sbjct 1021544 GTTGTCTCCCCAAACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAAC 1021600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989582339045105