Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq35 152 1e-31
seq66 150 4e-31
>seq35
Length=1329723
Score = 152 bits (168), Expect = 1e-31
Identities = 301/442 (68%), Gaps = 9/442 (2%)
Strand=Plus/Minus
Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975
|||||||||||||||| || || || |||||||| || || || || || ||||| ||||
Sbjct 994514 TTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCT 994455
Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035
|| ||||||| || ||| | ||||||| || |||| |||||| ||| |||| ||| | |
Sbjct 994454 GGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTG 994395
Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC- 102094
|||| || || || ||||||||| ||| |||| | || || |||
Sbjct 994394 ACGAGGGCCTGCACACCGACTTTGCTTGCCTGCT----CCACTCTCACCTGAAGA-ACCG 994340
Query 102095 --CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAAT 102152
||| |||| || | || | |||||| ||||||| |||||| |||| || ||||| |
Sbjct 994339 CGCCAGCAAG-GAGATTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCAAGAGT 994281
Query 102153 TTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212
| | || | | || || | | |||| |||||| || |||||| ||||
Sbjct 994280 TCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAGCAGT 994221
Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATG 102272
||||||| ||||| || ||| || | || | | || || ||| || ||
Sbjct 994220 ACATTGAGTTTGTTGCCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAGATTTACAAGT 994161
Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG 102332
|||||||||| |||||||| || || ||||| | ||||||||||| || |
Sbjct 994160 CCTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCG 994101
Query 102333 AAAAGAGAGTCGCCGAGTATCA 102354
| ||| | |||| |||||| ||
Sbjct 994100 AGAAGCGTGTCGGCGAGTACCA 994079
>seq66
Length=2244893
Score = 150 bits (166), Expect = 4e-31
Identities = 432/657 (66%), Gaps = 12/657 (2%)
Strand=Plus/Plus
Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451
||| ||||| || ||| || ||||| |||| |||| || |||||||||| | |||
Sbjct 1020950 ACCCTTGCCCTCCTTCTCGTACTTCTCATACAGAGCCTCGAATTCTTCGCCATAGCAGTC 1021009
Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGC-CTTC---A 94507
| |||||||||||| |||| ||||||||||| | ||| | || || |||| |
Sbjct 1021010 AGCAAGGCCAGGGCATTCGTTGGGGCACATCAAAGTCCAGT----CCAAGTTCTTCTCAA 1021065
Query 94508 CTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAAT 94567
| | || |||||| ||||||| | ||||| ||| |||| || || | | | | |
Sbjct 1021066 CACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCT 1021125
Query 94568 CTTCATTACCGGCATTCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATCAG 94627
|||| || ||| ||||| | | ||||| || || || || ||||||
Sbjct 1021126 CTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCT 1021185
Query 94628 AAATATAGATGGCTGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAG 94687
| |||||||| || || | ||||| || |||||| || | | | |||
Sbjct 1021186 CGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAG 1021245
Query 94688 AGACGTTAAAGATTTGGAGGAACGCCATGAGACCAGGGTGGGTACCACTCCATGACGA-A 94746
| ||| |||| | | || | | |||| ||| | |||||| | || || |
Sbjct 1021246 TGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGG-TGCCGGCA 1021304
Query 94747 ATGGGGCTTCCTTTTGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTG 94806
||| || | || | | | || | || | ||||| || ||||| |||||
Sbjct 1021305 ATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTG 1021364
Query 94807 GAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGG 94866
|| || || || ||| ||||| || || |||||||||||||| || || | | |
Sbjct 1021365 GAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATG 1021424
Query 94867 CCCAGAAGGAAGCACGAGGAAAGTTG-GGGTGTGACTGTTCCACAATTAAACAGTGTGGG 94925
||| |||||||| ||||| || || | |||| || ||| || || || |||||
Sbjct 1021425 TCCACCAGGAAGCATGAGGACAGCTGAGCTTGTG-GGGTACCAGCGTTGAAGAGGGTGGG 1021483
Query 94926 GGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGAT 94985
|| ||||||||||| | | || |||||||| | ||||| |||| |||| | ||
Sbjct 1021484 AGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGCTCAAT 1021543
Query 94986 GTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042
|| ||| || ||| |||||||||||||||||||||| ||| || ||||||||
Sbjct 1021544 GTTGTCTCCCCAAACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAAC 1021600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989582339045105
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |