Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq44 109 5e-19 >seq44 Length=3047126 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || ||||| |||||||||| |||| ||| || ||||| |||||| Sbjct 758293 GTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCAAGCTGCTTACCA 758352 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||| ||||| |||||||| || || || ||||| ||| || || Sbjct 758353 GCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 758412 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || |||| | ||||||||| | ||| | ||||||||||| | || Sbjct 758413 ACGTTGTCAATGGTATCGGATGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTC 758472 Query 139748 TTTACGAATA 139757 || |||| || Sbjct 758473 TTGACGACTA 758482 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || ||||||| |||| Sbjct 1396954 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 1396895 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||| ||||||||| |||||| || ||||| || || || ||||| || ||| Sbjct 1396894 TCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 1396835 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||||| | ||||||||||| ||| | | Sbjct 1396834 TCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATC 1396775 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | || || ||||| || ||||| Sbjct 1396774 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1396740 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| || || | || ||||| || || ||| Sbjct 758573 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCA 758632 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||||||| ||||| || ||||| ||||| || ||||| ||| || || Sbjct 758633 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTC 758692 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||||||||| | ||| | ||||||||||| | || Sbjct 758693 ACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 758752 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| |||||||| Sbjct 758753 TTGACGAAGATTTGCAT 758769 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | || | || ||||| | || ||| || || ||||| || ||| Sbjct 758032 TGGCCACCACGCAGGCGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 758091 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 |||| |||| |||||| ||||| |||||||| |||| || || ||||| || || Sbjct 758092 CTCAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGG 758151 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTC 139713 || || || || ||||| ||| | |||| || | | || | || || | | ||| Sbjct 758152 GGGATACCCTCCTTGTCC-TGAATCTTTGACTTGACGTTGTCGATGGTATCAGATGACTC 758210 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| || | || | |||||||||||||| || || || || || |||||| Sbjct 758211 CACTTCCAGTGTGATTGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCATA 758262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063187695200