Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq35 275 9e-69 seq66 150 3e-31 seq44 96.9 5e-15 >seq35 Length=1329723 Score = 275 bits (304), Expect = 9e-69 Identities = 589/865 (68%), Gaps = 35/865 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||||||||| |||| ||||| ||||| | ||||||| | |||||| Sbjct 994923 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTG 994864 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG----AGTTTAT 125134 |||||||| ||| |||| ||| | | || ||| || ||| |||| | || || Sbjct 994863 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 994808 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 || ||||| ||||||||||||| | |||||| || || |||||||| || ||| | Sbjct 994807 CTCTCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGA 994748 Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 || ||| ||| | || || |||| ||| ||||| ||||| ||||| |||| Sbjct 994747 GCGTTTCAGCGGCGAGGTTCAGATCCCCGAGG-CTCGATGCTTCTACGGTTTCCAGATCA 994689 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313 |||| |||||| | ||||| || | ||||| || || |||| ||| | || | Sbjct 994688 TGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGC 994629 Query 125314 ---CGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370 || || || || ||||| ||||| || || || | || | || ||||| | Sbjct 994628 ACAGCCAGCGCAACTAC---CTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGA 994572 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 ||||| | |||| || ||||||| | ||| | | ||||| | || | | || | Sbjct 994571 AGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGCCTTG 994512 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || || || ||||| ||||| |||||||| || ||||| ||||||| |||| Sbjct 994511 TTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGC 994452 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 |||||||| | || |||||||| || ||||| | |||||| | || ||||| |||| Sbjct 994451 TCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACG 994392 Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCG-AGTGC 125609 ||||||| ||| |||||||| | ||| | | ||| || || | || | Sbjct 994391 AGGGCCTGCACACCGACTTTGC---TTGCCTG---CTCCACTCTC----ACCTGAAGAAC 994342 Query 125610 AGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAG 125669 | ||||| | || | || | || | || |||||||| || || || |||||| Sbjct 994341 CGCGCCAGCAAGGAGATTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCAAGAG 994282 Query 125670 TTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGCAAGCTAATGTGCGA 125728 || | ||||| | || || | || || | ||||||||| || || ||| | Sbjct 994281 TTCTTGACCGAGGCTCT-CCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAGCA 994223 Query 125729 GTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTA 125785 |||||| |||||||| || |||||||| || || ||||| || |||||||| Sbjct 994222 GTACATTGAGTTTGTTGCCGATCGTCTGCT---CGTCGCTCTTGGCAACGAGAAGATTTA 994166 Query 125786 CAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTT 125845 ||| || || |||||||| |||||| | ||| || || | || ||||||||||| Sbjct 994165 CAAGTCCTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTT 994106 Query 125846 TTTCGAGAAGAAGGTCAGCGAGTAC 125870 ||||||||| ||| |||||||| Sbjct 994105 CTTCGAGAAGCGTGTCGGCGAGTAC 994081 >seq66 Length=2244893 Score = 150 bits (166), Expect = 3e-31 Identities = 322/474 (68%), Gaps = 8/474 (2%) Strand=Plus/Minus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 ||||||| ||||| ||||| || || || || || | ||| ||||| | || |||| Sbjct 1021239 GATACGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCTT 1021180 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||||| || || ||||| || | || | ||||| ||| ||| ||||||| | Sbjct 1021179 GGCACGCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCC 1021120 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--CAA 97042 | ||| | ||| |||| || |||||| | || ||| ||||||||||||| || | Sbjct 1021119 GTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAGA 1021060 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 || ||| |||||| | ||||||||| || | || || || | || |||| Sbjct 1021059 AGAACTTGG--ACTGGACTTTGATGTGCCCCAACGAATGCCCTGGCCTTGCTGACTGCTA 1021002 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGAC 97161 |||||||| || ||||| ||| | |||||| | |||||| | || |||| Sbjct 1021001 TGGCGAAGAATTCGAGGCTCTGTATGAGAAGTACGAGAAGGAGGGCAAGGGTCGCAAGAC 1020942 Query 97162 GAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | ||| || | |||| |||||| | ||||| | ||| ||| |||||||| | Sbjct 1020941 TATCCGA-GCTC-AGAAGCTGTGGTACTCCATCCTAGAGGCCCAGACTGAGACTGGTAAC 1020884 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | || || ||||||||| || || ||||| |||||||| || |||| ||| Sbjct 1020883 CCCTTTATGCTTTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACC 1020824 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||| ||||||| || ||||| || || || |||||| | | || |||||| Sbjct 1020823 ATCCGAAGCTCCAACCTCTGCACTGAGATCGTTGAGTACTCTGCCCCTGACGAG 1020770 >seq44 Length=3047126 Score = 96.9 bits (106), Expect = 5e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 126682 TCAATGTAGTCTACGATGCGTTCAATGTCACACTCTTTGACACCACGGGTCGTCACCGCA 126741 |||||||| || |||| ||| |||| ||| |||| || |||||| | |||| ||| Sbjct 1964876 TCAATGTACTCGACGACGCGCTCAAAGTCCTTCTCTCCGAAGCCACGGCTGGTCATGGCA 1964935 Query 126742 GGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTT 126801 || ||||| | || ||| |||| || | |||||||||||||||||||| | | ||| Sbjct 1964936 GGGGTACCAATTCGGATACCGCAAGGAGTCAGAGCGCTCTTGTCTCCGGGAATGGCGTTC 1964995 Query 126802 TTGTTGCAAGCGATTCTGCACAGTTCGAGGA 126832 |||||||| || || || | | ||||||| Sbjct 1964996 TTGTTGCAGGCAATGTTGATCTGCTCGAGGA 1965026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057986515560