Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq35 275 9e-69
seq66 150 3e-31
seq44 96.9 5e-15
>seq35
Length=1329723
Score = 275 bits (304), Expect = 9e-69
Identities = 589/865 (68%), Gaps = 35/865 (4%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||||||||| |||| ||||| ||||| | ||||||| | ||||||
Sbjct 994923 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTG 994864
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG----AGTTTAT 125134
|||||||| ||| |||| ||| | | || ||| || ||| |||| | || ||
Sbjct 994863 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 994808
Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194
|| ||||| ||||||||||||| | |||||| || || |||||||| || ||| |
Sbjct 994807 CTCTCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGA 994748
Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253
|| ||| ||| | || || |||| ||| ||||| ||||| ||||| ||||
Sbjct 994747 GCGTTTCAGCGGCGAGGTTCAGATCCCCGAGG-CTCGATGCTTCTACGGTTTCCAGATCA 994689
Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313
|||| |||||| | ||||| || | ||||| || || |||| ||| | || |
Sbjct 994688 TGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGC 994629
Query 125314 ---CGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370
|| || || || ||||| ||||| || || || | || | || ||||| |
Sbjct 994628 ACAGCCAGCGCAACTAC---CTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGA 994572
Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430
||||| | |||| || ||||||| | ||| | | ||||| | || | | || |
Sbjct 994571 AGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGCCTTG 994512
Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490
| || || || ||||| ||||| |||||||| || ||||| ||||||| ||||
Sbjct 994511 TTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGC 994452
Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550
|||||||| | || |||||||| || ||||| | |||||| | || ||||| ||||
Sbjct 994451 TCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACG 994392
Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCG-AGTGC 125609
||||||| ||| |||||||| | ||| | | ||| || || | || |
Sbjct 994391 AGGGCCTGCACACCGACTTTGC---TTGCCTG---CTCCACTCTC----ACCTGAAGAAC 994342
Query 125610 AGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAG 125669
| ||||| | || | || | || | || |||||||| || || || ||||||
Sbjct 994341 CGCGCCAGCAAGGAGATTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCAAGAG 994282
Query 125670 TTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGCAAGCTAATGTGCGA 125728
|| | ||||| | || || | || || | ||||||||| || || ||| |
Sbjct 994281 TTCTTGACCGAGGCTCT-CCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAGCA 994223
Query 125729 GTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTA 125785
|||||| |||||||| || |||||||| || || ||||| || ||||||||
Sbjct 994222 GTACATTGAGTTTGTTGCCGATCGTCTGCT---CGTCGCTCTTGGCAACGAGAAGATTTA 994166
Query 125786 CAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTT 125845
||| || || |||||||| |||||| | ||| || || | || |||||||||||
Sbjct 994165 CAAGTCCTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTT 994106
Query 125846 TTTCGAGAAGAAGGTCAGCGAGTAC 125870
||||||||| ||| ||||||||
Sbjct 994105 CTTCGAGAAGCGTGTCGGCGAGTAC 994081
>seq66
Length=2244893
Score = 150 bits (166), Expect = 3e-31
Identities = 322/474 (68%), Gaps = 8/474 (2%)
Strand=Plus/Minus
Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924
||||||| ||||| ||||| || || || || || | ||| ||||| | || ||||
Sbjct 1021239 GATACGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCTT 1021180
Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984
||||||| || || ||||| || | || | ||||| ||| ||| ||||||| |
Sbjct 1021179 GGCACGCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCC 1021120
Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--CAA 97042
| ||| | ||| |||| || |||||| | || ||| ||||||||||||| || |
Sbjct 1021119 GTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAGA 1021060
Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102
|| ||| |||||| | ||||||||| || | || || || | || ||||
Sbjct 1021059 AGAACTTGG--ACTGGACTTTGATGTGCCCCAACGAATGCCCTGGCCTTGCTGACTGCTA 1021002
Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGAC 97161
|||||||| || ||||| ||| | |||||| | |||||| | || ||||
Sbjct 1021001 TGGCGAAGAATTCGAGGCTCTGTATGAGAAGTACGAGAAGGAGGGCAAGGGTCGCAAGAC 1020942
Query 97162 GAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220
| ||| || | |||| |||||| | ||||| | ||| ||| |||||||| |
Sbjct 1020941 TATCCGA-GCTC-AGAAGCTGTGGTACTCCATCCTAGAGGCCCAGACTGAGACTGGTAAC 1020884
Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280
|| | || || ||||||||| || || ||||| |||||||| || |||| |||
Sbjct 1020883 CCCTTTATGCTTTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACC 1020824
Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334
||| ||||||| || ||||| || || || |||||| | | || ||||||
Sbjct 1020823 ATCCGAAGCTCCAACCTCTGCACTGAGATCGTTGAGTACTCTGCCCCTGACGAG 1020770
>seq44
Length=3047126
Score = 96.9 bits (106), Expect = 5e-15
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 126682 TCAATGTAGTCTACGATGCGTTCAATGTCACACTCTTTGACACCACGGGTCGTCACCGCA 126741
|||||||| || |||| ||| |||| ||| |||| || |||||| | |||| |||
Sbjct 1964876 TCAATGTACTCGACGACGCGCTCAAAGTCCTTCTCTCCGAAGCCACGGCTGGTCATGGCA 1964935
Query 126742 GGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTT 126801
|| ||||| | || ||| |||| || | |||||||||||||||||||| | | |||
Sbjct 1964936 GGGGTACCAATTCGGATACCGCAAGGAGTCAGAGCGCTCTTGTCTCCGGGAATGGCGTTC 1964995
Query 126802 TTGTTGCAAGCGATTCTGCACAGTTCGAGGA 126832
|||||||| || || || | | |||||||
Sbjct 1964996 TTGTTGCAGGCAATGTTGATCTGCTCGAGGA 1965026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741057986515560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |