Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq44 95.1 1e-14
>seq44
Length=3047126
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/212 (71%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576
|| || || || ||||||||||| || |||||||| || || | || || |||| ||
Sbjct 758053 ACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GCTCAGGGTGCGACCGTCTTC 758111
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||||||||| || | || | |||||||| || || | || |||||||||
Sbjct 758112 CAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTG 758171
Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
||| || ||||| | | || |||||||| | |||||| || | ||| || ||
Sbjct 758172 AATCTTTGACTTGACGTTGTCG--ATGGTATCAGATGACTCCACTTCCAGTGTGATTGTC 758229
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| ||||| | ||| || ||||| ||||||||
Sbjct 758230 TTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 758261
Score = 86.0 bits (94), Expect = 5e-12
Identities = 129/181 (71%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593
|||||| || ||||||||||| || | || || ||||||| ||||||||||| |
Sbjct 758298 CTCCTTCTGGATGTTGTAATC-GCTCAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCAA 758356
Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653
| || | ||||||||| || || | || ||||||||| || || |||||
Sbjct 758357 AGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGT 758416
Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713
| |||||||||| |||||| ||||| || ||||| || ||||||||||| || |
Sbjct 758417 TGTCAATGGTATCGGATGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGA 758476
Query 48714 C 48714
|
Sbjct 758477 C 758477
Score = 84.2 bits (92), Expect = 2e-11
Identities = 149/213 (70%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582
|| || ||| |||||| || |||||||| || || | || || | ||||| |||||
Sbjct 1396942 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTC-GCTCAGGGTGCGGCCATCCTCGAGCTG 1396884
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
|||||| | | || || |||||||| ||| || | | ||||||||| || ||
Sbjct 1396883 CTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 1396824
Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700
||||| | | || ||||| |||| ||||||| ||| | || || || || ||
Sbjct 1396823 GGACTTGACGTTGTCG--ATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCC 1396766
Query 48701 GTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733
||||| || || || |||||||||||| || ||
Sbjct 1396765 GTGAGGGTCTTGACGAAAATCTGCATCTTGCCT 1396733
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421250527446131
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |