Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq66 333 7e-86 >seq66 Length=2244893 Score = 333 bits (368), Expect = 7e-86 Identities = 1068/1635 (65%), Gaps = 44/1635 (3%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || || || ||| | || || | | ||| ||||| || | | | ||| |||| || Sbjct 1021498 TTTACCCATGCCTCTCCCACCCTCTTCAACGCTGGTACCCCACAAGCTCAGCTGTCCTCA 1021439 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | ||||||||||| ||| |||||||||| ||||| || |||| Sbjct 1021438 TGCTTCCTGGTGGACATGAAGGACGACAGCATTGAGGGTATCTACGACACTCTAAAGACA 1021379 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | |||||||||| || || || || || | | || ||||| | | ||||| Sbjct 1021378 TGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGCCTGAACG-TCCACCGTATCCGTGC 1021320 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 | | ||||||| |||||| || ||| || || | | ||||||||||| Sbjct 1021319 TACGGGCTCTTACATTGCCGGCACCAACGGTACCTCCAACGGTATCATCCCCATGCTTCG 1021260 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || || |||| ||||| || ||||||||||||||||| |||||| || || || Sbjct 1021259 AGTCTTCAACAACACTGCCAGATACGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTT 1021200 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AA 363904 ||| || || ||||||||| || |||||| | |||||||| ||||| ||||| || || Sbjct 1021199 TGCCATCTACCTCGAGCCTTGGCACGCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAA 1021140 Query 363905 ACACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGA 363962 ||||| || |||||| | ||||| ||||| |||||| || || ||| | |||| Sbjct 1021139 CCACGGCAAGGAAGAGG---TCCGTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGA 1021083 Query 363963 CCATTTTATGAAGCGCGTGGAGGCAGGTAAGAA-TTGGTC---ACTCT--TTTGCCCACA 364016 | || |||||||| || ||| ||||| |||| | ||| | | ||||| | Sbjct 1021082 TCTGTTCATGAAGCGTGTTGAG------AAGAACTTGGACTGGACTTTGATGTGCCCCAA 1021029 Query 364017 CGAATGTCCAGGTCTTTCCGA-TG-TATGGGGTGACGACTATGTTGCTCTATACGAAAAG 364074 |||||| || || ||| | || || ||| || || || | | ||||| || || ||| Sbjct 1021028 CGAATGCCCTGGCCTTGCTGACTGCTAT--GGCGAAGAATTCGAGGCTCTGTATGAGAAG 1020971 Query 364075 TATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATC 364134 || || |||||| |||| ||| ||||| || | || |||||||| |||| ||||| Sbjct 1020970 TACGAGAAGGAGGGCAAGGGTCGCAAGACTATCCGAGCTCAGAAGCTGTGGTACTCCATC 1020911 Query 364135 ATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGC 364194 | || | |||| |||||| || | |||| |||| | ||||| ||| | ||||||||| Sbjct 1020910 CTAGAGGCCCAGACTGAGACTGGTAACCCCTTTATGCTTTACAAGGATGCCTGCAACCGC 1020851 Query 364195 AAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTAT 364253 ||| ||||||| || |||| || || | || | || |||||| || || ||||| | Sbjct 1020850 AAGAGCAACCAGAAGAACCTGGGAACCA-TCCGAAGCTCCAACCTCTGCACTGAGATCGT 1020792 Query 364254 TGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGC 364313 ||| ||| | || || |||||| || || || ||| | || || | || || || || Sbjct 1020791 TGAGTACTCTGCCCCTGACGAGGTCGCTGTCTGCAACTTGGCCTCTTTGGCTCTCCCTGC 1020732 Query 364314 GTTTGT------AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCA 364367 ||||| || || || | |||| || | ||| | || || ||| | Sbjct 1020731 CTTTGTCGACTATAACGAAGGCTGCTATGACTTTAAGAAGCTTCACGATGTTACCAAGGT 1020672 Query 364368 TGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG 364426 | | | || ||| || | ||||| ||| || || || ||| || || || Sbjct 1020671 GGTTGTCCGTAACCTCAACCGCATCATCGATGTGAACTACTACCCCGTTCAGGAGGCTCG 1020612 Query 364427 -AGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTT 364485 | | ||| | || || || || |||||| ||||||| ||||| || ||||||| | Sbjct 1020611 CAAC--AGTAACAGCCGCCACCGACCCATTGGTGTTGGTGTTCAGGGTCTTGCTGACGCT 1020554 Query 364486 TTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATC 364545 || | || | | || || || || || ||||| | | || ||| | ||| Sbjct 1020553 TTCCTCGCTCTGCGTCTTCCTTTCGAATCACCCGAAGCTCGCGAGTTGAACAAGCAAATC 1020494 Query 364546 TTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGA 364605 ||||| || || || || || | || || || | || || | | |||| Sbjct 1020493 TTTGAGACCATCTACCACGCTGCCCTCGAGGCATCTATGGAGATTGCCAAGATCGAGGGT 1020434 Query 364606 AAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGG 364665 || | | |||| || || || | || | |||||||||| | ||| Sbjct 1020433 CCTTATGAGTCATTCAAGGGATCACCCGCCTCTGAAGGCATTCTCCAGTTTGACTTGTGG 1020374 Query 364666 AATGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCA 364724 |||||| ||| ||| || ||| | ||||| |||| | | | | ||||| |||| Sbjct 1020373 GATGTCAAGCCCACTGACCTGTGGGAGTGGGACTCGCTCAAGGAGC-AGATTAAGGAGCA 1020315 Query 364725 TGGTACTCGCAAC---TCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGAT 364781 |||| ||||||| | ||||| || ||||||||||| || ||| | ||||| Sbjct 1020314 CGGTATTCGCAACAGTTTGCTCGT---CGCCCCCATGCCCACTGCCAGCACTTCCCAGAT 1020258 Query 364782 CCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCT 364841 ||| || ||||| || |||||||| || | || ||| | || || || || || Sbjct 1020257 CCTGGGCAACAATGAATGCTTCGAGCCCTACACCTCCAACATCTACCAGCGACGTGTCCT 1020198 Query 364842 TTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCT 364901 | | || || || | ||| || || | || ||||||||||| ||| || || Sbjct 1020197 TGCTGGCGAGTTCCAGGTTGTCAACCCCTGGCTTCTCAAGGATCTTGTCGATACTGGCCT 1020138 Query 364902 GTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCC 364961 ||| || ||||||||| ||||| || | || |||||| | ||||||||||| Sbjct 1020137 CTGGTCCGATGCTATGAAGAACCGCATCATTGCTGAGAACGGTTCTATCCAGAACATTCC 1020078 Query 364962 AGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAAC 365021 |||| | || | ||| | | ||||| || || ||||| || || ||| Sbjct 1020077 CAACATTCCCGCCGACATCAAGGCCCTGTACAAGACTGTTTGGGAGATCTCTCAGCGCCA 1020018 Query 365022 TCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGT 365081 || | | ||| | ||||| || |||||||| || |||| |||||| || ||| | Sbjct 1020017 CATCGTCCAGATGTCAGCCGACCGTGGTGCTTTCATTGATCAGTCCCAGTCCTTGAACAT 1019958 Query 365082 ATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATC 365141 ||||| | || || | |||| |||| |||||| ||| || ||||| Sbjct 1019957 CCACATGAAGGATCCCACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGAAGCT 1019898 Query 365142 CGGTCTTAAGACAGG 365156 ||||| ||||| || Sbjct 1019897 TGGTCTCAAGACTGG 1019883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303351412402442