Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq35 147 2e-30
seq44 143 3e-29
seq66 131 2e-25
seq42 104 2e-17
>seq35
Length=1329723
Score = 147 bits (162), Expect = 2e-30
Identities = 350/521 (67%), Gaps = 21/521 (4%)
Strand=Plus/Minus
Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143
|| || ||| | || ||||| | |||||||| || ||||||||| | || | |
Sbjct 994590 ATTCCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGACTCT 994531
Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203
| || || |||| | || |||||||| || ||||| |||| || ||
Sbjct 994530 TCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCC 994471
Query 46204 TTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263
|||||| ||||||| | |||| | | || ||||||| |||||||| || ||||
Sbjct 994470 TTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAAC 994411
Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACAC 46322
||||| || || || |||||||||||||| || |||||||| || || || | || |
Sbjct 994410 GAGCTCATCTCTCGTGACGAGGGCCTGCACACCGACTTTGCTTGCCTGCTCC----ACTC 994355
Query 46323 TCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGC------ATGTTCAAGGAGGC 46376
|| | || | || ||||| | || | | | | | || ||| || ||
Sbjct 994354 TCACCTGAAGAACC-----GCGCCAG-CAAGGAGATTATCCGTGAAATCATCACTGATGC 994301
Query 46377 GGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAA 46436
|| || ||| | ||||| || || | || || ||| ||| ||||||||||||||
Sbjct 994300 CGTCAGAATCGAGCAAGAGTTCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAA 994241
Query 46437 CGCACAGTCA-ATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTC 46495
||| || | ||| | ||||| |||||||| || || || |||||||| |||
Sbjct 994240 CGC-CACCCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTCGTCGCTCTTG 994182
Query 46496 ACCAGCCGAAGCATTTTCACGCGCGC-AATCCATTTGAGTTTATGAACAACATCTCCCTG 46554
| | |||| |||| || | | | || || ||||| || ||| | ||||||||||||
Sbjct 994181 GCAACGAGAAG-ATTTACAAGTCCTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTG 994123
Query 46555 GAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595
| ||||| || || || ||||| ||||| |||||||||||
Sbjct 994122 GGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTA 994082
>seq44
Length=3047126
Score = 143 bits (158), Expect = 3e-29
Identities = 162/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| || || | || | ||| |||||||| || |||||||||||||||
Sbjct 758263 CCACCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTC 758322
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| |||||||| || || |||| | |||||||||||| ||||||
Sbjct 758323 AGGGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGG 758382
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | ||||||| ||||| |
Sbjct 758383 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCCACC 758442
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
|||| ||| | ||| || ||||| ||||| || ||||
Sbjct 758443 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGA 758479
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||||| || | || | ||| |||||||| || |||||||| ||||||
Sbjct 1396966 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 1396907
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| |||||||| || || |||| || |||||||||||||| ||
Sbjct 1396906 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGA 1396847
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || |||| ||||| |
Sbjct 1396846 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1396787
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | || || || || || || || ||||||||||||||
Sbjct 1396786 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1396740
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | || || || | || | ||| |||||||| || |||||||| ||| |
Sbjct 758543 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 758602
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || ||||| || |||||||| ||| |||| | |||||||||||| |||||
Sbjct 758603 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 758662
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||| | | || | ||| |||| ||||| |
Sbjct 758663 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCACC 758722
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|||| ||| | ||| || ||||| || || || ||||| || ||||||
Sbjct 758723 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 758770
Score = 113 bits (124), Expect = 4e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| |||| || || || || || | ||| |||||| || |||||||| |||||
Sbjct 758034 GCCACCACGCAGGCGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 758093
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| |||||| ||| || |||||||| || ||| |||| | ||||||||||| || ||
Sbjct 758094 CAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGG 758153
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185
||| || || ||||| ||| | | || ||||| | || | ||||| | ||||| |
Sbjct 758154 GATACCCTCCTTGTC-CTGAATCTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCA 758212
Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | || || ||||| | ||| || || || ||||||||
Sbjct 758213 CTTCCAGTGTGATTGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 758261
>seq66
Length=2244893
Score = 131 bits (144), Expect = 2e-25
Identities = 908/1441 (63%), Gaps = 37/1441 (3%)
Strand=Plus/Plus
Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117
||||| ||||| |||||||| || | ||||| ||| || | ||| || ||| ||||
Sbjct 1020174 TTGACAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGC 1020233
Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177
|| || | || || ||||||||||| || | || | || ||||||||| || ||
Sbjct 1020234 TCGAAGCATTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACG 1020293
Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237
| || ||||| | ||||||| ||| || | ||||| |||| |||| |||||
Sbjct 1020294 AGCAAACTGTTGCGAATACCGTGCTCCTTAATCTGCTCCTTGAGCGAGTCCCACTCCCAC 1020353
Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGG-GCT 145296
|| ||| ||| | || ||||||| ||| |||| | |||||| || |||||| | |
Sbjct 1020354 AGGTCAGTGGGCTTGACATCCCACAAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGAT 1020413
Query 145297 GCCTTGAAAGGAACT-GTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAG 145355
||||||| | ||| ||| ||| | ||||| | ||| | ||||| || |
Sbjct 1020414 CCCTTGAATG--ACTCATAAGGACCCTCGATCTTGGCAATCTCCATAGATGCCTCGAGGG 1020471
Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGC-----AGCATCGCTTCATCGCT 145410
| || || || ||||| |||||| |||| | | ||| ||| | ||
Sbjct 1020472 CAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTGAT---- 1020527
Query 145411 CTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGAT 145470
||| | || | ||||| | ||||| || || || ||||| | || || || ||
Sbjct 1020528 -TCGAAAGGAAGACGCAGAGCGAGGAAAGCGTCAGCAAGACCCTGAACACCAACACCAAT 1020586
Query 145471 GGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATTACGGTCGA 145529
||| || || |||| || | | ||| || | || || | | | || ||||
Sbjct 1020587 GGGTCGGTGGCGGCTGTTACTGTTGCGAGCCTCCTGAACGGGGTAGTAGTTCAC-ATCGA 1020645
Query 145530 TAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAA 145589
| || || | ||| || || || ||||| |||| | | | ||| | |||||||
Sbjct 1020646 TGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACATCGTGAAGCTTCTTAAAGTCAT 1020705
Query 145590 ACCGAGCC-TCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACT 145648
| | |||| |||| | | | ||| || | || || | || ||||| || || ||
Sbjct 1020706 AGC-AGCCTTCGTTATAGTCGACAAAGGCAGGGAGAGCCAAAGAGGCCAAGTTGCAGACA 1020764
Query 145649 GCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATG 145708
|| ||| || | | | ||| | |||||||| | ||| | ||| | | ||||
Sbjct 1020765 GCGACCTCGTCAGGGGCAGAGTACTCAACGATCTCAGTGCAGAGGTTGGAGCTTCGGATG 1020824
Query 145709 GTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768
|||||||| || | ||| || || || | |||||| || |||||||| ||||| | ||
Sbjct 1020825 GTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATAAAGGGG 1020884
Query 145769 CCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACCTGC 145828
|||||||| ||| | ||| | ||| | || | ||| || || | |
Sbjct 1020885 TTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCTTCTGAGCTCGGA--TAG 1020942
Query 145829 TGCTGGTAGC--GGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGT 145886
| || | | |||||| | ||||| ||| || || |||| || | || |
Sbjct 1020943 TCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCATACAGAGCCTCGAATTCTTCGCCAT 1021002
Query 145887 AGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGT 145946
|||| || | ||||| || || | |||||| ||||||| | ||| | ||| |
Sbjct 1021003 AGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATCAAAGTCCAGTCCAAGTTCTTCT 1021062
Query 145947 TGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGC 146006
|| |||| ||| |||| ||| || | ||| || ||| | || ||| || || |
Sbjct 1021063 CAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGA 1021122
Query 146007 AATCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACT-ATAGATGTCCGCGTGCCA 146064
|| || || ||| | || | | ||| | ||| | ||| || ||||||||
Sbjct 1021123 CCTCTTCCTTGCCGTGGTTCTTGC-GGAGGTCAAGGA-ACTCAAAGACATCGGCGTGCCA 1021180
Query 146065 CGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGACG 146121
|| || | |||| ||| | ||| || || |||||||||||||| |||| |
Sbjct 1021181 AGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCT 1021240
Query 146122 TACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGA 146181
| ||||||| ||||| || | |||||| || ||| ||| ||||| ||
Sbjct 1021241 GGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCC 1021300
Query 146182 GTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GCCGT 146240
| || | ||| | || | | || || |||| ||||| ||| || ||| |
Sbjct 1021301 GGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCAT 1021360
Query 146241 ACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG--C 146297
|||||| || ||| || ||| || || |||||||| || |||||||| ||| |
Sbjct 1021361 -CTTGGAAATCATGGCACATGTC-TTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCC 1021418
Query 146298 TTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACA 146357
||| ||| | | ||| ||||| ||| ||| ||| || || || || || ||| |
Sbjct 1021419 TTC--ATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGA 1021476
Query 146358 ACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGT 146417
|| || || || ||||| | ||| | | ||| | | || || || | |
Sbjct 1021477 GGGTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACAC 1021536
Query 146418 CTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCT 146477
| ||||| ||| || || ||| | ||| || ||||| | |||||| || || ||||
Sbjct 1021537 GCTCAATGTTGTCTCCCCAAACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCT 1021596
Query 146478 C 146478
|
Sbjct 1021597 C 1021597
>seq42
Length=797865
Score = 104 bits (114), Expect = 2e-17
Identities = 132/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| || |||||||| || || ||| || ||||| ||||||||||| ||| |||
Sbjct 706003 CCTTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 706062
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| || |||||||| ||||| |||||||| || ||||| ||| || ||||| | |
Sbjct 706063 TCAATCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 706122
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | || |||| |||||||| || | ||| | ||| || || || || || || ||||
Sbjct 706123 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 706182
Query 131225 AA 131226
||
Sbjct 706183 AA 706184
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472012027079040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |