Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq35 147 2e-30 seq44 143 3e-29 seq66 131 2e-25 seq42 104 2e-17 >seq35 Length=1329723 Score = 147 bits (162), Expect = 2e-30 Identities = 350/521 (67%), Gaps = 21/521 (4%) Strand=Plus/Minus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || || ||| | || ||||| | |||||||| || ||||||||| | || | | Sbjct 994590 ATTCCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGACTCT 994531 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 | || || |||| | || |||||||| || ||||| |||| || || Sbjct 994530 TCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCC 994471 Query 46204 TTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263 |||||| ||||||| | |||| | | || ||||||| |||||||| || |||| Sbjct 994470 TTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAAC 994411 Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACAC 46322 ||||| || || || |||||||||||||| || |||||||| || || || | || | Sbjct 994410 GAGCTCATCTCTCGTGACGAGGGCCTGCACACCGACTTTGCTTGCCTGCTCC----ACTC 994355 Query 46323 TCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGC------ATGTTCAAGGAGGC 46376 || | || | || ||||| | || | | | | | || ||| || || Sbjct 994354 TCACCTGAAGAACC-----GCGCCAG-CAAGGAGATTATCCGTGAAATCATCACTGATGC 994301 Query 46377 GGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAA 46436 || || ||| | ||||| || || | || || ||| ||| |||||||||||||| Sbjct 994300 CGTCAGAATCGAGCAAGAGTTCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAA 994241 Query 46437 CGCACAGTCA-ATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTC 46495 ||| || | ||| | ||||| |||||||| || || || |||||||| ||| Sbjct 994240 CGC-CACCCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTCGTCGCTCTTG 994182 Query 46496 ACCAGCCGAAGCATTTTCACGCGCGC-AATCCATTTGAGTTTATGAACAACATCTCCCTG 46554 | | |||| |||| || | | | || || ||||| || ||| | |||||||||||| Sbjct 994181 GCAACGAGAAG-ATTTACAAGTCCTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTG 994123 Query 46555 GAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 | ||||| || || || ||||| ||||| ||||||||||| Sbjct 994122 GGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTA 994082 >seq44 Length=3047126 Score = 143 bits (158), Expect = 3e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| |||||||| || ||||||||||||||| Sbjct 758263 CCACCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTC 758322 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || || |||| | |||||||||||| |||||| Sbjct 758323 AGGGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGG 758382 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||||||| ||||| | Sbjct 758383 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCCACC 758442 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| ||| | ||| || ||||| ||||| || |||| Sbjct 758443 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGA 758479 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | ||| |||||||| || |||||||| |||||| Sbjct 1396966 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 1396907 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || || |||| || |||||||||||||| || Sbjct 1396906 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGA 1396847 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 1396846 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1396787 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || |||||||||||||| Sbjct 1396786 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1396740 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||| |||||||| || |||||||| ||| | Sbjct 758543 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 758602 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || |||||||| ||| |||| | |||||||||||| ||||| Sbjct 758603 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 758662 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | ||| |||| ||||| | Sbjct 758663 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCACC 758722 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || ||||| || || || ||||| || |||||| Sbjct 758723 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 758770 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| || || || || || | ||| |||||| || |||||||| ||||| Sbjct 758034 GCCACCACGCAGGCGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 758093 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||| || |||||||| || ||| |||| | ||||||||||| || || Sbjct 758094 CAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGG 758153 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| || || ||||| ||| | | || ||||| | || | ||||| | ||||| | Sbjct 758154 GATACCCTCCTTGTC-CTGAATCTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCA 758212 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| | ||| || || || |||||||| Sbjct 758213 CTTCCAGTGTGATTGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 758261 >seq66 Length=2244893 Score = 131 bits (144), Expect = 2e-25 Identities = 908/1441 (63%), Gaps = 37/1441 (3%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| |||||||| || | ||||| ||| || | ||| || ||| |||| Sbjct 1020174 TTGACAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGC 1020233 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || | || || ||||||||||| || | || | || ||||||||| || || Sbjct 1020234 TCGAAGCATTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACG 1020293 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | || ||||| | ||||||| ||| || | ||||| |||| |||| ||||| Sbjct 1020294 AGCAAACTGTTGCGAATACCGTGCTCCTTAATCTGCTCCTTGAGCGAGTCCCACTCCCAC 1020353 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGG-GCT 145296 || ||| ||| | || ||||||| ||| |||| | |||||| || |||||| | | Sbjct 1020354 AGGTCAGTGGGCTTGACATCCCACAAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGAT 1020413 Query 145297 GCCTTGAAAGGAACT-GTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAG 145355 ||||||| | ||| ||| ||| | ||||| | ||| | ||||| || | Sbjct 1020414 CCCTTGAATG--ACTCATAAGGACCCTCGATCTTGGCAATCTCCATAGATGCCTCGAGGG 1020471 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGC-----AGCATCGCTTCATCGCT 145410 | || || || ||||| |||||| |||| | | ||| ||| | || Sbjct 1020472 CAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTGAT---- 1020527 Query 145411 CTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGAT 145470 ||| | || | ||||| | ||||| || || || ||||| | || || || || Sbjct 1020528 -TCGAAAGGAAGACGCAGAGCGAGGAAAGCGTCAGCAAGACCCTGAACACCAACACCAAT 1020586 Query 145471 GGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATTACGGTCGA 145529 ||| || || |||| || | | ||| || | || || | | | || |||| Sbjct 1020587 GGGTCGGTGGCGGCTGTTACTGTTGCGAGCCTCCTGAACGGGGTAGTAGTTCAC-ATCGA 1020645 Query 145530 TAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAA 145589 | || || | ||| || || || ||||| |||| | | | ||| | ||||||| Sbjct 1020646 TGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACATCGTGAAGCTTCTTAAAGTCAT 1020705 Query 145590 ACCGAGCC-TCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACT 145648 | | |||| |||| | | | ||| || | || || | || ||||| || || || Sbjct 1020706 AGC-AGCCTTCGTTATAGTCGACAAAGGCAGGGAGAGCCAAAGAGGCCAAGTTGCAGACA 1020764 Query 145649 GCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATG 145708 || ||| || | | | ||| | |||||||| | ||| | ||| | | |||| Sbjct 1020765 GCGACCTCGTCAGGGGCAGAGTACTCAACGATCTCAGTGCAGAGGTTGGAGCTTCGGATG 1020824 Query 145709 GTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768 |||||||| || | ||| || || || | |||||| || |||||||| ||||| | || Sbjct 1020825 GTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATAAAGGGG 1020884 Query 145769 CCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACCTGC 145828 |||||||| ||| | ||| | ||| | || | ||| || || | | Sbjct 1020885 TTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCTTCTGAGCTCGGA--TAG 1020942 Query 145829 TGCTGGTAGC--GGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGT 145886 | || | | |||||| | ||||| ||| || || |||| || | || | Sbjct 1020943 TCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCATACAGAGCCTCGAATTCTTCGCCAT 1021002 Query 145887 AGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGT 145946 |||| || | ||||| || || | |||||| ||||||| | ||| | ||| | Sbjct 1021003 AGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATCAAAGTCCAGTCCAAGTTCTTCT 1021062 Query 145947 TGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGC 146006 || |||| ||| |||| ||| || | ||| || ||| | || ||| || || | Sbjct 1021063 CAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGA 1021122 Query 146007 AATCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACT-ATAGATGTCCGCGTGCCA 146064 || || || ||| | || | | ||| | ||| | ||| || |||||||| Sbjct 1021123 CCTCTTCCTTGCCGTGGTTCTTGC-GGAGGTCAAGGA-ACTCAAAGACATCGGCGTGCCA 1021180 Query 146065 CGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGACG 146121 || || | |||| ||| | ||| || || |||||||||||||| |||| | Sbjct 1021181 AGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCT 1021240 Query 146122 TACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGA 146181 | ||||||| ||||| || | |||||| || ||| ||| ||||| || Sbjct 1021241 GGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCC 1021300 Query 146182 GTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GCCGT 146240 | || | ||| | || | | || || |||| ||||| ||| || ||| | Sbjct 1021301 GGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCAT 1021360 Query 146241 ACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG--C 146297 |||||| || ||| || ||| || || |||||||| || |||||||| ||| | Sbjct 1021361 -CTTGGAAATCATGGCACATGTC-TTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCC 1021418 Query 146298 TTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACA 146357 ||| ||| | | ||| ||||| ||| ||| ||| || || || || || ||| | Sbjct 1021419 TTC--ATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGA 1021476 Query 146358 ACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGT 146417 || || || || ||||| | ||| | | ||| | | || || || | | Sbjct 1021477 GGGTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACAC 1021536 Query 146418 CTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCT 146477 | ||||| ||| || || ||| | ||| || ||||| | |||||| || || |||| Sbjct 1021537 GCTCAATGTTGTCTCCCCAAACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCT 1021596 Query 146478 C 146478 | Sbjct 1021597 C 1021597 >seq42 Length=797865 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || || ||| || ||||| ||||||||||| ||| ||| Sbjct 706003 CCTTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 706062 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || |||||||| ||||| |||||||| || ||||| ||| || ||||| | | Sbjct 706063 TCAATCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 706122 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||||| || | ||| | ||| || || || || || || |||| Sbjct 706123 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 706182 Query 131225 AA 131226 || Sbjct 706183 AA 706184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012027079040