Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq99 140 2e-28 seq35 136 3e-27 >seq99 Length=2041487 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1312543 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1312602 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1312603 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1312637 >seq35 Length=1329723 Score = 136 bits (150), Expect = 3e-27 Identities = 206/293 (70%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 || || |||||||||||||| ||| ||||||| ||||| | || || ||||| ||| Sbjct 838641 GATGCCTTCTACCGCTACAAGATGGAGCGCATCCAGACCAAGATTGAAGGCAAGGGTAAC 838700 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 ||||| || ||||| | |||||| || | ||||| || | || | ||||||| Sbjct 838701 GGTATCAAGACCGTTGTCGTCAACTTGTCCAGCGTCGCCCAGTCTCTTGCTCGCCCTGGT 838760 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 |||| | || || || || | ||| ||||| |||||||| | |||| | ||| Sbjct 838761 TCCTATGTCATCAAGTACTTTGGTTTCGAGCTTGGTGCTCAGACCAACATTGACCCCAAG 838820 Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 |||| || | ||| | ||||| | || | ||||||||||||||||| ||||| Sbjct 838821 GACGACCGTTGGATCATCAACGGCGCCCACGATGCTGCCAAGCTGCAGGACCATCTTGAT 838880 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 ||||| || ||| ||||| || || | ||||| | ||||| |||||||| Sbjct 838881 GGCTTCATCAACAAATTTGTCCTCTGCAAGAAATGCAAGAACCCTGAGACCGA 838933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946665235861