Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq99 140 2e-28
seq35 136 3e-27
>seq99
Length=2041487
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1312543 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1312602
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 1312603 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1312637
>seq35
Length=1329723
Score = 136 bits (150), Expect = 3e-27
Identities = 206/293 (70%), Gaps = 0/293 (0%)
Strand=Plus/Plus
Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254
|| || |||||||||||||| ||| ||||||| ||||| | || || ||||| |||
Sbjct 838641 GATGCCTTCTACCGCTACAAGATGGAGCGCATCCAGACCAAGATTGAAGGCAAGGGTAAC 838700
Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314
||||| || ||||| | |||||| || | ||||| || | || | |||||||
Sbjct 838701 GGTATCAAGACCGTTGTCGTCAACTTGTCCAGCGTCGCCCAGTCTCTTGCTCGCCCTGGT 838760
Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374
|||| | || || || || | ||| ||||| |||||||| | |||| | |||
Sbjct 838761 TCCTATGTCATCAAGTACTTTGGTTTCGAGCTTGGTGCTCAGACCAACATTGACCCCAAG 838820
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434
|||| || | ||| | ||||| | || | ||||||||||||||||| |||||
Sbjct 838821 GACGACCGTTGGATCATCAACGGCGCCCACGATGCTGCCAAGCTGCAGGACCATCTTGAT 838880
Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
||||| || ||| ||||| || || | ||||| | ||||| ||||||||
Sbjct 838881 GGCTTCATCAACAAATTTGTCCTCTGCAAGAAATGCAAGAACCCTGAGACCGA 838933
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334946665235861
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |