Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq35 183 3e-41
>seq35
Length=1329723
Score = 183 bits (202), Expect = 3e-41
Identities = 485/729 (67%), Gaps = 15/729 (2%)
Strand=Plus/Plus
Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985
||| || ||||| || |||||||| ||||| ||||| || || ||| | ||
Sbjct 994201 ATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGA-GCAC 994259
Query 92986 AGGT-AGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044
||| ||||| ||||||||||| |||| ||||||| ||||| || | | ||||||
Sbjct 994260 AGGGGAGAGCCTCGGTCAAGAACTCTTGCTCGATTCTGACGGCATCAGTGATGATTTCAC 994319
Query 93045 T--TACTCTACTATTTGGTG-GTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGT 93101
|| ||| || ||| | | || | | | | | | | || ||| |||||||
Sbjct 994320 GGATAATCTCCTTGCTGGCGCGGTTCTTCAGGTGAGAGTGGAGCAG---GCAAGCAAAGT 994376
Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161
|||| || | || ||||| || || || | ||| ||| ||| || | || || | |
Sbjct 994377 CGGTGTGCAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGA 994436
Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221
| |||| ||||||||||| || || || ||||| || || || ||||| || |
Sbjct 994437 GACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCGA 994496
Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT-GATCCATTTT 93280
|||| ||||| || |||| || | ||||| | | || | || |||||| ||
Sbjct 994497 CGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTT-GTCCTGGATCCACTTG 994555
Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340
| ||||| || || || || || ||||| | || || || ||||| || |||||
Sbjct 994556 ATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAG 994615
Query 93341 TCTCGCTCG-TCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399
| |||| | | | || | | ||| || ||||| | ||| || || | || || ||
Sbjct 994616 TTGCGCTGGCTGTGCTCCTTG-ACGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTG 994674
Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459
|| |||||||| || ||||| |||||||| |||| ||| || | |||||| || ||
Sbjct 994675 GATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTC 994734
Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519
|| | ||| || || || || ||||| || || ||||| || ||||| || ||
Sbjct 994735 GCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAAGAAGGC 994794
Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCCAATCGGATAG 93576
|| || || || || | ||||| ||||| || | | || | ||| ||| ||
Sbjct 994795 CAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAG 994854
Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636
||| || || ||||| | |||||| | ||||| || || || || || |||||||||||
Sbjct 994855 ATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACAT 994914
Query 93637 ATCCCATAT 93645
| ||| ||
Sbjct 994915 TTGCCAGAT 994923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556859888140440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |