Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq35 183 3e-41 >seq35 Length=1329723 Score = 183 bits (202), Expect = 3e-41 Identities = 485/729 (67%), Gaps = 15/729 (2%) Strand=Plus/Plus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| || ||||| || |||||||| ||||| ||||| || || ||| | || Sbjct 994201 ATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGA-GCAC 994259 Query 92986 AGGT-AGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 ||| ||||| ||||||||||| |||| ||||||| ||||| || | | |||||| Sbjct 994260 AGGGGAGAGCCTCGGTCAAGAACTCTTGCTCGATTCTGACGGCATCAGTGATGATTTCAC 994319 Query 93045 T--TACTCTACTATTTGGTG-GTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGT 93101 || ||| || ||| | | || | | | | | | | || ||| ||||||| Sbjct 994320 GGATAATCTCCTTGCTGGCGCGGTTCTTCAGGTGAGAGTGGAGCAG---GCAAGCAAAGT 994376 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 |||| || | || ||||| || || || | ||| ||| ||| || | || || | | Sbjct 994377 CGGTGTGCAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGA 994436 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221 | |||| ||||||||||| || || || ||||| || || || ||||| || | Sbjct 994437 GACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCGA 994496 Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT-GATCCATTTT 93280 |||| ||||| || |||| || | ||||| | | || | || |||||| || Sbjct 994497 CGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTT-GTCCTGGATCCACTTG 994555 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340 | ||||| || || || || || ||||| | || || || ||||| || ||||| Sbjct 994556 ATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAG 994615 Query 93341 TCTCGCTCG-TCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 | |||| | | | || | | ||| || ||||| | ||| || || | || || || Sbjct 994616 TTGCGCTGGCTGTGCTCCTTG-ACGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTG 994674 Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 || |||||||| || ||||| |||||||| |||| ||| || | |||||| || || Sbjct 994675 GATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGATCTGAACCTC 994734 Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 || | ||| || || || || ||||| || || ||||| || ||||| || || Sbjct 994735 GCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAAGAAGGC 994794 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCCAATCGGATAG 93576 || || || || || | ||||| ||||| || | | || | ||| ||| || Sbjct 994795 CAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAG 994854 Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 ||| || || ||||| | |||||| | ||||| || || || || || ||||||||||| Sbjct 994855 ATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACAT 994914 Query 93637 ATCCCATAT 93645 | ||| || Sbjct 994915 TTGCCAGAT 994923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859888140440