Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq35 116 8e-21
seq110 96.9 7e-15
seq66 89.7 1e-12
>seq35
Length=1329723
Score = 116 bits (128), Expect = 8e-21
Identities = 529/832 (64%), Gaps = 35/832 (4%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| |||| ||||| |||||||||||| |||||||| | |
Sbjct 994100 TCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAG 994159
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| ||||| ||| | |||||| || |||| | || || || |||||||| |
Sbjct 994160 GACTTGTAAATCTTCTCGTTGCCAAGAGCGACGAGCAGACGATCGGCAACAAACTCAATG 994219
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| |||||| | ||||||||| | || | ||| || | ||||| | |
Sbjct 994220 TACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGAGCACAGGGGAGAGCCTCGGTCAAG 994279
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT------TCACCTGTGCCAGA 251796
|| || | ||| | || || || | ||| | || ||| ||| |
Sbjct 994280 AACTCTTGCTCGATTCTGACGGCATCAGTGATGATTTCACGGATAATCTCCT-TGCTGGC 994338
Query 251797 GACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGC---CAAACTGTTGGTGCAGACCC 251853
| ||||| ||| | |||| ||||| || |||| | |||||| |||
Sbjct 994339 GCG-----GTTCTTCAGGTGAGAGT---GGAGCAGGCAAGCAAAGTCGGTGTGCAGGCCC 994390
Query 251854 TCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTG 251913
||||| ||| ||||| ||||||||| | |||||||||||| | || | ||| ||
Sbjct 994391 TCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCTCTTCTTG 994450
Query 251914 AGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCA 251973
||||||||||| | | ||||| ||| ||| | | ||||||||| | | |||
Sbjct 994451 AGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCA 994510
Query 251974 ACAAGGCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTGTGCCCATGCT 252027
|||||||||| |||||| || ||||||||| | |||| ||||| |
Sbjct 994511 ACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTG---GATCCACTTGATGGCCCAGTCA 994567
Query 252028 GCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCA 252087
|||||||| | | || || || || || || | ||||| |||| |||| |
Sbjct 994568 GCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTTGCGCTGGCTG 994627
Query 252088 TCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTG 252147
| |||| || | | || | || || ||||| |||| || |||||| || |
Sbjct 994628 TGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATC 994687
Query 252148 AACATCTGGTAAGCATAGA---ATAGACGCGCGGAAGGGTCGGTGACT-TCCGTGGAAAA 252203
| |||||| || | |||| || || | ||| || || | || ||| ||||
Sbjct 994688 ATGATCTGGAAACCGTAGAAGCATCGAGCCTCGG--GGATCTGAACCTCGCCGCTGAAAC 994745
Query 252204 GTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGT 252263
| | | | |||||| | || ||||| ||| | | ||||||||| | || |||
Sbjct 994746 G--CTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAAGAAGGCCAGGATGTG 994803
Query 252264 CTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATT 252323
|||||||| ||| || ||||| || || ||||||| | ||||
Sbjct 994804 AGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTTGGA 994863
Query 252324 CAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATT 252375
|||| || ||||| | |||||||| | | | | ||||| |||||||||
Sbjct 994864 CAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACATT 994915
>seq110
Length=2123283
Score = 96.9 bits (106), Expect = 7e-15
Identities = 425/667 (64%), Gaps = 7/667 (1%)
Strand=Plus/Minus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || || || || |||||||||||||||||||| || | | || || || || |
Sbjct 784915 GTCGGCTCGCTCTCTGGTGGTTGGAAGATGAAGCTCGCTTTGGCCCGAGCTATGCTCAAG 784856
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
||||||||||||| || | || || || || ||||| | || | ||| | |||
Sbjct 784855 GGTGCCGATGTCCTCTTGTTGGACGAACCTACTAACCATCTTGATGTTGCAAACATTGCC 784796
Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875
||||| | | ||| || | | | | || | | || || || ||||||
Sbjct 784795 TGGCTTGAGAACTATCTCAAGACACACCCCGACATTACCAGTTTGATCGTGTCCCACGAC 784736
Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935
|| |||||||| || ||| | ||| |||| || ||||||| || |||||||
Sbjct 784735 TCCGGCTTCCTGGACAACGTCACCACTGACATCTACCATTATGAGCCCAACAAGAAGCTC 784676
Query 279936 TCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTAC 279995
| ||| |||||||| |||| || || | | ||||| ||||| ||||
Sbjct 784675 GCTTGCTACAAGGGCAACCTTGCTGCCTTTGTTGAACTTCGCCCCGAGGCCAAGAGCTAC 784616
Query 279996 TATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGC 280055
|| ||| || ||| | | ||| | |||||| || || || || ||
Sbjct 784615 TACACCCTCTCGGCATCCAATGTCCAGTTCAAGTTCCCTCCTCCCGGTATTTTGACTGGT 784556
Query 280056 ATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAAT 280115
|| | || || || || ||||| | | |||||| || | ||||||||
Sbjct 784555 ATTAAGTCTCAGACCCGTGCCATCATCCGTATGAGCAACGTCTCTTTCACCTATCCCAAG 784496
Query 280116 GGCCCCAACATCTTCAG---CAG-TGTCAACTCGCAGGTT-TCTATGAACTCACGGATTG 280170
| ||||| ||||| ||| |||| || || | ||| || |||||| | |
Sbjct 784495 GCTCCCAAGC-CTTCACTCTCAGATGTCT-CTTGCTCTCTGTCTTTGTCCTCACGAGTAG 784438
Query 280171 GTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGA 280230
| ||||||||||||||||| || |||||||| | ||||| | || || || ||||
Sbjct 784437 CCATTATTGGACCCAATGGTGCCGGCAAGTCTACTTTGATCAAGCTGCTTACCGGTGAGA 784378
Query 280231 CCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTC 280290
|| |||| | || || |||||| |||||| | || || | |||| || |
Sbjct 784377 CCATTCCCACCGTCGGTAAGGTCGAGAAGCACCCCAACCTTCGAATTGGTTACATCAAGC 784318
Query 280291 AGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGT 280350
||||||| | | ||| | |||| ||||| || | |||||| ||||| || | ||||
Sbjct 784317 AGCACGCCCTGGAGCACGTTGAGATGCACCTTGAGAAGACTCCCAACCAGTATCTGCAGT 784258
Query 280351 GGCGCTA 280357
|||| ||
Sbjct 784257 GGCGATA 784251
>seq66
Length=2244893
Score = 89.7 bits (98), Expect = 1e-12
Identities = 157/226 (69%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|||||||| || || |||| ||||| || || || |||| ||||||||||| |||
Sbjct 1486186 GGTGAGGACCTTTGCAACTGCACCTTCTCTCTTGCCTACGGTGCCAAGATTCTGCTTAAC 1486245
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | ||| | |||||||||| | || |||||||| ||||||||| || |
Sbjct 1486246 CAGACTCACCTGCGCCTCAAGCGTGGTCAGCGTTATGGTCTTTGCGGTCCCAACGGTTCC 1486305
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||||| ||||| ||||| |||| ||| | | ||| ||||| | |||
Sbjct 1486306 GGCAAGTCTACTCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 1486364
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569
|| || | ||| || | || |||||||| |||||||| ||
Sbjct 1486365 GAGCGAAGTCAAGACTGTCTTCGTTGAGCACGATCTCGACTCCGCT 1486410
Score = 84.2 bits (92), Expect = 4e-11
Identities = 103/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||| || || || ||||| || || || ||| ||||| |||| | | ||
Sbjct 1487588 CTCACTCGCGTATGCGTGGTCTGTCCGGTGGTCAGCGTGTCAAGACTGTCTTGGCTGCTT 1487647
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
||||| ||||| | || ||| ||||||| || ||||||||||||||||||||||| ||
Sbjct 1487648 GCTCT-TGGCAGCGACCCCACTTGATCGTCCTTGACGAGCCTACCAACTATCTGGATCGT 1487706
Query 280821 GAGAGCCTGGGCGCTCTG 280838
|| ||||| ||||||
Sbjct 1487707 GACTCTCTGGGTGCTCTG 1487724
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027835074840171
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |