Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq35 116 8e-21 seq110 96.9 7e-15 seq66 89.7 1e-12 >seq35 Length=1329723 Score = 116 bits (128), Expect = 8e-21 Identities = 529/832 (64%), Gaps = 35/832 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| |||| ||||| |||||||||||| |||||||| | | Sbjct 994100 TCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAG 994159 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||| | |||||| || |||| | || || || |||||||| | Sbjct 994160 GACTTGTAAATCTTCTCGTTGCCAAGAGCGACGAGCAGACGATCGGCAACAAACTCAATG 994219 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| | ||||||||| | || | ||| || | ||||| | | Sbjct 994220 TACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGAGCACAGGGGAGAGCCTCGGTCAAG 994279 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT------TCACCTGTGCCAGA 251796 || || | ||| | || || || | ||| | || ||| ||| | Sbjct 994280 AACTCTTGCTCGATTCTGACGGCATCAGTGATGATTTCACGGATAATCTCCT-TGCTGGC 994338 Query 251797 GACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGC---CAAACTGTTGGTGCAGACCC 251853 | ||||| ||| | |||| ||||| || |||| | |||||| ||| Sbjct 994339 GCG-----GTTCTTCAGGTGAGAGT---GGAGCAGGCAAGCAAAGTCGGTGTGCAGGCCC 994390 Query 251854 TCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTG 251913 ||||| ||| ||||| ||||||||| | |||||||||||| | || | ||| || Sbjct 994391 TCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCTCTTCTTG 994450 Query 251914 AGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCA 251973 ||||||||||| | | ||||| ||| ||| | | ||||||||| | | ||| Sbjct 994451 AGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCA 994510 Query 251974 ACAAGGCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTGTGCCCATGCT 252027 |||||||||| |||||| || ||||||||| | |||| ||||| | Sbjct 994511 ACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTG---GATCCACTTGATGGCCCAGTCA 994567 Query 252028 GCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCA 252087 |||||||| | | || || || || || || | ||||| |||| |||| | Sbjct 994568 GCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTTGCGCTGGCTG 994627 Query 252088 TCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTG 252147 | |||| || | | || | || || ||||| |||| || |||||| || | Sbjct 994628 TGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATC 994687 Query 252148 AACATCTGGTAAGCATAGA---ATAGACGCGCGGAAGGGTCGGTGACT-TCCGTGGAAAA 252203 | |||||| || | |||| || || | ||| || || | || ||| |||| Sbjct 994688 ATGATCTGGAAACCGTAGAAGCATCGAGCCTCGG--GGATCTGAACCTCGCCGCTGAAAC 994745 Query 252204 GTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGT 252263 | | | | |||||| | || ||||| ||| | | ||||||||| | || ||| Sbjct 994746 G--CTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGCAAAGAAGGCCAGGATGTG 994803 Query 252264 CTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATT 252323 |||||||| ||| || ||||| || || ||||||| | |||| Sbjct 994804 AGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTTGGA 994863 Query 252324 CAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATT 252375 |||| || ||||| | |||||||| | | | | ||||| ||||||||| Sbjct 994864 CAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACATT 994915 >seq110 Length=2123283 Score = 96.9 bits (106), Expect = 7e-15 Identities = 425/667 (64%), Gaps = 7/667 (1%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || || || |||||||||||||||||||| || | | || || || || | Sbjct 784915 GTCGGCTCGCTCTCTGGTGGTTGGAAGATGAAGCTCGCTTTGGCCCGAGCTATGCTCAAG 784856 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||||||||||| || | || || || || ||||| | || | ||| | ||| Sbjct 784855 GGTGCCGATGTCCTCTTGTTGGACGAACCTACTAACCATCTTGATGTTGCAAACATTGCC 784796 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | ||| || | | | | || | | || || || |||||| Sbjct 784795 TGGCTTGAGAACTATCTCAAGACACACCCCGACATTACCAGTTTGATCGTGTCCCACGAC 784736 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935 || |||||||| || ||| | ||| |||| || ||||||| || ||||||| Sbjct 784735 TCCGGCTTCCTGGACAACGTCACCACTGACATCTACCATTATGAGCCCAACAAGAAGCTC 784676 Query 279936 TCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTAC 279995 | ||| |||||||| |||| || || | | ||||| ||||| |||| Sbjct 784675 GCTTGCTACAAGGGCAACCTTGCTGCCTTTGTTGAACTTCGCCCCGAGGCCAAGAGCTAC 784616 Query 279996 TATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGC 280055 || ||| || ||| | | ||| | |||||| || || || || || Sbjct 784615 TACACCCTCTCGGCATCCAATGTCCAGTTCAAGTTCCCTCCTCCCGGTATTTTGACTGGT 784556 Query 280056 ATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAAT 280115 || | || || || || ||||| | | |||||| || | |||||||| Sbjct 784555 ATTAAGTCTCAGACCCGTGCCATCATCCGTATGAGCAACGTCTCTTTCACCTATCCCAAG 784496 Query 280116 GGCCCCAACATCTTCAG---CAG-TGTCAACTCGCAGGTT-TCTATGAACTCACGGATTG 280170 | ||||| ||||| ||| |||| || || | ||| || |||||| | | Sbjct 784495 GCTCCCAAGC-CTTCACTCTCAGATGTCT-CTTGCTCTCTGTCTTTGTCCTCACGAGTAG 784438 Query 280171 GTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGA 280230 | ||||||||||||||||| || |||||||| | ||||| | || || || |||| Sbjct 784437 CCATTATTGGACCCAATGGTGCCGGCAAGTCTACTTTGATCAAGCTGCTTACCGGTGAGA 784378 Query 280231 CCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTC 280290 || |||| | || || |||||| |||||| | || || | |||| || | Sbjct 784377 CCATTCCCACCGTCGGTAAGGTCGAGAAGCACCCCAACCTTCGAATTGGTTACATCAAGC 784318 Query 280291 AGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGT 280350 ||||||| | | ||| | |||| ||||| || | |||||| ||||| || | |||| Sbjct 784317 AGCACGCCCTGGAGCACGTTGAGATGCACCTTGAGAAGACTCCCAACCAGTATCTGCAGT 784258 Query 280351 GGCGCTA 280357 |||| || Sbjct 784257 GGCGATA 784251 >seq66 Length=2244893 Score = 89.7 bits (98), Expect = 1e-12 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| ||||| || || || |||| ||||||||||| ||| Sbjct 1486186 GGTGAGGACCTTTGCAACTGCACCTTCTCTCTTGCCTACGGTGCCAAGATTCTGCTTAAC 1486245 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| | |||||||||| | || |||||||| ||||||||| || | Sbjct 1486246 CAGACTCACCTGCGCCTCAAGCGTGGTCAGCGTTATGGTCTTTGCGGTCCCAACGGTTCC 1486305 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 1486306 GGCAAGTCTACTCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 1486364 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 || || | ||| || | || |||||||| |||||||| || Sbjct 1486365 GAGCGAAGTCAAGACTGTCTTCGTTGAGCACGATCTCGACTCCGCT 1486410 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| || || || ||||| || || || ||| ||||| |||| | | || Sbjct 1487588 CTCACTCGCGTATGCGTGGTCTGTCCGGTGGTCAGCGTGTCAAGACTGTCTTGGCTGCTT 1487647 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||| | || ||| ||||||| || ||||||||||||||||||||||| || Sbjct 1487648 GCTCT-TGGCAGCGACCCCACTTGATCGTCCTTGACGAGCCTACCAACTATCTGGATCGT 1487706 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || ||||| |||||| Sbjct 1487707 GACTCTCTGGGTGCTCTG 1487724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835074840171