Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq44 170 4e-37 seq35 154 3e-32 seq66 109 1e-18 >seq44 Length=3047126 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || |||||||| || |||||||| || ||| Sbjct 1396966 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 1396907 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || | || || ||||| || ||| Sbjct 1396906 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGA 1396847 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 1396846 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1396787 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 1396786 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1396740 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || |||||||| || |||||||| || ||||| Sbjct 758543 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 758602 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| || ||||| || || | || ||||| || ||| Sbjct 758603 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 758662 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||| || ||||| ||||| | || || || Sbjct 758663 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCACC 758722 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| || ||||| Sbjct 758723 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 758769 >seq35 Length=1329723 Score = 154 bits (170), Expect = 3e-32 Identities = 562/868 (65%), Gaps = 25/868 (3%) Strand=Plus/Plus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || |||||||||||||| || || |||||||||||||| |||||| Sbjct 994061 TTCATGACACCGGCCTTCTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCG 994120 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGG-CGCCAAACTGCTTGGGGTA 10051 | ||||| ||| ||||||||||||||||||||| || | || | ||| || Sbjct 994121 CCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAGGACTTGTAAAT-CTTCTCGTT 994179 Query 10052 ACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGA 10111 || || || || | || || || || ||||| |||||||| |||||||| | Sbjct 994180 GCCAAGAGCGACGAGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGC 994239 Query 10112 GTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGAC 10171 ||||||||| | || ||||||| || ||| | ||| || | ||| | ||| Sbjct 994240 GTTCATGCCCAGCAGAGCACAGGGGAGAGCCTCGGTCAAGAACTCTTGCTCGATTCTGAC 994299 Query 10172 CGCTTCCTCGACGAT---GCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGA 10228 || || || ||| | | | | | | || || ||||| || | || Sbjct 994300 GGCATCAGTGATGATTTCACGGATAATCTCCTTGCTGG--CGC-GGTTCTTCAGGTGAGA 994356 Query 10229 ATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGA 10288 | || || |||| | ||| ||||||||||| || ||||| ||||||||| Sbjct 994357 GTGGAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAGATGAGCTCGTTGGA 994416 Query 10289 CAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCC 10348 || ||| || |||||||| || | || |||||||| |||| | || | || Sbjct 994417 GAAGGTCAGGCCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCC 994476 Query 10349 GGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTC 10408 | ||| | | |||||| ||| | |||| || ||||||| || ||||| ||| Sbjct 994477 GCTGAAGAAGATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGAAGAGTC 994536 Query 10409 ---GCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTC 10465 | | | | || |||||| | |||||||| | | | ||| || ||||| Sbjct 994537 CTTGTCCTGGATCCACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTC 994596 Query 10466 GATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAA--TAAGAGCATCAAGGAGC 10523 || || | |||||| | ||| |||| | | | |||| | || | | || | |||| Sbjct 994597 AATGGCGTTGAAGAGGTAGTTGCGCTGGCTGTGCTCCTTGACGTAGGTG--TCGATGAGC 994654 Query 10524 AGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACG 10582 |||||||| |||| ||||| | |||| | |||| || ||||||| ||| || Sbjct 994655 AGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAT-CG 994713 Query 10583 TGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCC 10642 ||| |||| | || || || || | | ||||||||| | || ||||| Sbjct 994714 AGCCTCGGGGATCTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCC 994773 Query 10643 ATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA- 10701 ||| | | ||||||||| | |||||||| |||||||| ||| |||||||||| Sbjct 994774 GTCGGAGGCAGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAG 994833 Query 10702 ---GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGA 10758 ||| || |||||| || ||||| | || | | ||| || ||||||||| Sbjct 994834 GCGGTTGTT----CCAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGA 994889 Query 10759 AAGTGGCAACGGCCTTCTTGTACATCTG 10786 | | || ||||||| |||||||| || Sbjct 994890 AGGAAGCCTCGGCCTTTTTGTACATTTG 994917 >seq66 Length=2244893 Score = 109 bits (120), Expect = 1e-18 Identities = 661/1038 (64%), Gaps = 44/1038 (4%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | || ||| ||||||||||||| ||||| ||| |||||| Sbjct 1487195 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCCAGGTGGTTATCAATGTGGGCGAAAGCG 1487136 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | || | ||| || Sbjct 1487135 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCGCCAGTGGGG 1487076 Query 225101 -TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || || || ||| || || ||||| || |||| ||| || ||||| ||||||||||| Sbjct 1487075 ATGAGC-TCACCGCAAAGAACGTTGATCAGGGTAGACTTTCCAGCACCGTTGGGGCCAAT 1487017 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGG--- 225216 ||| |||| || || || | ||| || | | | | ||| ||| || Sbjct 1487016 GACGGCAATACGAGAGCCCAGAGAGCACTGGAAGCTGATTTCGGTGA---TCTGGGGCTT 1486960 Query 225217 GCCAGTTT---GGTAAGCAAAGGCCACGCCACGCAGCTT-CATGATGGCACGGTCCTTGG 225272 | ||| |||| |||| || | | ||| || |||||| | |||||| Sbjct 1486959 GGAAGTACCGGGGTACTGGAAGGACAT-CTTGGTAGCACGCAGGATGGCCTTGGCCTTGG 1486901 Query 225273 AAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCA 225332 | | |||||| ||||| |||||||||||||| ||| | || | | | | | Sbjct 1486900 TCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGCTGAACTCGATCTCAGAGGCACCAA 1486841 Query 225333 GGTCGTAGTAAGATGCAGCCTCGGGT---CGCTTTGCCACGAAAGCAGACAGGTTTCCGA 225389 | |||||||| || || || ||||| ||||| | |||||| || Sbjct 1486840 GCTCGTAGTAGGACTTGGCAGAAGGAACACGCTTG---ACGAACTCCTTCAGGTTACCAC 1486784 Query 225390 GGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTCA 225448 ||| | | ||||||| | || |||| ||||| || ||| | ||| || |||| Sbjct 1486783 GGTAACGCTTAAGCTTGAAGCGCT---CGTAGTGAACGATGTGCTG-GCAGACGTTGTCA 1486728 Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGA---G 225504 ||||||| |||||||| || || |||||||| | || | | || |||| | Sbjct 1486727 AGGAAGCTTGAGTCGTGAGAGACGATGATGGAAGTGCAAG---GAGAG----TTGACAAG 1486675 Query 225505 GTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAA 225563 || || | |||||| ||||| | ||||||| |||||| ||||| ||||| |||| Sbjct 1486674 GTA-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTAGTAGGCTCGTCAAGAA 1486616 Query 225564 GCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCC 225623 ||||||| || | | || || ||| || |||| |||||||| ||||| || | Sbjct 1486615 GCAGGATATCGGGGGCCTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCCAACCAC 1486556 Query 225624 CGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTC---CAGGA 225680 | || || | | ||| | | | | | ||| |||||| |||| |||| Sbjct 1486555 CAGAAAGAGCGGAGATCTCACCCTGGACCATCTGCTCGGTGAAGCCGAACTCGTCCAGGC 1486496 Query 225681 GCGTCTGGATAATGCGCTCGGGAGAGCT-GCGAGCGGCAACGTTGGGGTCGGACGAGAGG 225739 || ||| || | | || ||| || | | |||| || | | | | Sbjct 1486495 GCTTCTCGACA-TCAGCCTGGGTGACATTGACCTCGGCCTCGGCCAGCTTCTTCATGGTC 1486437 Query 225740 TAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTC 225799 | ||| |||||| || | | ||| | ||| | ||||| || ||| | || ||| Sbjct 1486436 CACTCAATGGTGGTCATCTCAGTGTCAGCGGAGTCGAGATCGTGCTCAACGAAGACAGTC 1486377 Query 225800 CGGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAG 225858 || | | || | |||||| ||||| | ||| | || || ||||| | || Sbjct 1486376 TTGACTTCGCTCTGCTT-GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATGAG 1486318 Query 225859 GGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTT 225918 ||| |||||| | |||||||||||| || || ||| | | || ||||||| | Sbjct 1486317 AGTAGACTTGCCGGAACCGTTGGGACCGCAAAGACCATAACGCTGACCACGCTTGAGGCG 1486258 Query 225919 GAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCA 225978 ||| | || ||| || || |||||| |||| |||||||| ||||| ||| | ||| Sbjct 1486257 CAGGTGAGTCTGGTTAAGCAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTGCAGTTGCA 1486198 Query 225979 CAGGTCCTCACCCTCCTC 225996 ||||||||||||||||| Sbjct 1486197 AAGGTCCTCACCCTCCTC 1486180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620890843320