Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq35 385 9e-102 seq66 343 3e-89 >seq35 Length=1329723 Score = 385 bits (426), Expect = 9e-102 Identities = 607/856 (71%), Gaps = 20/856 (2%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||| ||||| || ||| |||||||||||| |||||||| ||| Sbjct 994923 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTG 994864 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415 ||||||| | || |||| | || | |||| || |||| |||| ||| || Sbjct 994863 TCCAAGGATCTGCACGACTGGAACA-ACCGCCTGAACGATGACGAGAAGTACTTCATCTC 994805 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| ||||||||||| || ||||| |||||||| ||||| |||||||||| | | Sbjct 994804 TCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGAGCG 994745 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| | ||||| || ||||||||||| |||||||| || Sbjct 994744 TTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGAT 994685 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| || ||||||| |||| ||| || ||| | Sbjct 994684 GGAGAACATCCACTCCGAGACCTACTCC---CTGCTCATCGACACCTACGTCAAGGAGCA 994628 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | | |||| ||| || ||||| ||||| ||||| || || |||||| |||||||| Sbjct 994627 CAGCCAGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGAAGGC 994568 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 |||||||| |||| |||||| || ||| | | || | || | || || || Sbjct 994567 TGACTGGGCCATCAAGTGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGCCTTGTTGC 994508 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 |||| | ||||||||||| ||||||||| || ||||| |||||||||||||||||||| Sbjct 994507 CTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAA 994448 Query 42773 GCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | ||| |||| || ||||| || || |||||||| ||||| |||||| | ||||||| Sbjct 994447 GAAGAGAGGTCTC-ATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGG 994389 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA 42891 | ||||| | |||||||| ||||| || ||| ||||| | | || || | Sbjct 994388 GCCTGCACACCGACTTTGCTTGCCTGCTCCACTC---TCACCTGAAGAACCGCGCCAGCA 994332 Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951 ||||| |||| | |||||||| || ||||| |||||| | |||||| | || Sbjct 994331 AGGAGATTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCAAGAGTTCTTGACCG 994272 Query 42952 AGTCGCTGCCC-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAG 43010 || | || ||| ||| | ||| | ||||||||| | ||| ||| ||||||| || Sbjct 994271 AGGCTCTCCCCTGTG-CTCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATTGAG 994213 Query 43011 TACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTG 43069 | || ||||| | ||| || || | ||| || | | ||||| | | Sbjct 994212 TTTGTTGCCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAG-ATTTACAAGTCCTCCAA 994154 Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||| ||||| |||||||||||||| ||| |||||||||||||| ||||||||||| Sbjct 994153 CCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCG 994094 Query 43130 CGTCGCCGACTACCAG 43145 |||| ||| |||||| Sbjct 994093 TGTCGGCGAGTACCAG 994078 >seq66 Length=2244893 Score = 343 bits (380), Expect = 3e-89 Identities = 1149/1767 (65%), Gaps = 67/1767 (4%) Strand=Plus/Plus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 ||||||||| ||||| | || |||| ||| | ||||||||||||||| |||||||| | Sbjct 1019836 TGAACTGGATAGGTGCAGCCGCAGCCTGGGTACGCAGGTAGTACATGCCAGTCTTGAGAC 1019895 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 || |||| | || ||||||| || | ||| ||| | |||| | Sbjct 1019896 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCAT-------TGTGGGA--T 1019946 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGG 243920 ||| || || ||| | ||||||| ||| || | ||| | | || || || | Sbjct 1019947 CCTT---CATGTGGATGTTCAAGGACTGGGACTGATCAATGAAAGCACCACGGTCGGCTG 1020003 Query 243921 CCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGT 243980 ||| || || || |||||| ||||| | | |||||||| | || ||||| || Sbjct 1020004 ACATCTGGACGATGTGGCGCTGAGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGATGT 1020063 Query 243981 GCTCGGGGAACCCTTCGA-TGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGC 244039 |||| || | || ||||||| | || || || | | |||| || | | Sbjct 1020064 CGGCGGG-AATGTTGGGAATGTTCTGGATAGAACCGTTCTCAGCAATGATGCGGTTCTTC 1020122 Query 244040 ATGTTATCGTTCCACAGGCCCA-AGCGCTCCAGCGCCTCGA----CCAGGTGCCTGTTCA 244094 || |||| ||| ||||| | || | || ||| || ||||| | || | Sbjct 1020123 ATAGCATCGGACCAGAGGCCAGTATCGA-CAAGATCCTTGAGAAGCCAGGGG----TTGA 1020177 Query 244095 CCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGA 244154 | ||||| ||||| || | || || || |||||||||| |||| | || ||||||| Sbjct 1020178 CAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGA 1020237 Query 244155 TGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCA 244214 || || |||||||||| ||||| | ||||| ||||| |||||||| | || |||| Sbjct 1020238 AGCATTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCA 1020297 Query 244215 GACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGC 244274 |||||| | | |||||| || || | ||||| || ||| ||||||| | Sbjct 1020298 AACTGTTGCGAATACCGTGCTCCTTAATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGT 1020357 Query 244275 CCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGG 244334 | || || | |||| |||||| ||||||||| || | || | | || | Sbjct 1020358 C--AGTGGGC-------TTGACATCCCACAAGTCAAACTGGAGAATGCCTT--CAGAGGC 1020406 Query 244335 GGCTG--CCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGT 244391 || || |||| | | | | || ||||| ||| || ||| | || | || | | | Sbjct 1020407 GGGTGATCCCTTGAATGACTCATAAGGACCCTCGATCTTGGCAATCTCCATAGATGCC-T 1020465 Query 244392 CGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGC 244451 ||||||| |||| |||||||||||| ||||| |||||||| ||||| || | | Sbjct 1020466 CGAGGGCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTG 1020525 Query 244452 AGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGA 244511 | ||| || | | || | ||| |||| || || ||||| || || | || | Sbjct 1020526 ATTCGAAAGGAAGACGCAGAGCGAGGAAAGCGTCAGCAAGACCCTGAACACCAACACCAA 1020585 Query 244512 TGGGTCTGTGTCGCTTGTT---GGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGT 244568 |||||| ||| || |||| | ||| || || | |||||||| |||| | | Sbjct 1020586 TGGGTCGGTGGCGGCTGTTACTGTTGCGA---GCCTCCTGAACGGGGTAGTAGTTCACAT 1020642 Query 244569 CGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGT 244628 |||| | ||||||||| ||| | || | || ||| ||| || ||||| Sbjct 1020643 CGATGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACATCGTGAAGCTTCTTAAAGT 1020702 Query 244629 CGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC-ACAAACTCGTTGAGGGCGACGCTG 244687 | || | | ||| | || || || ||||| | ||| || | | Sbjct 1020703 CATA-------GCAGCCT------TCGTTATAGTCGACAAAGGCAGGGAGAGCCAAAGAG 1020749 Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| ||||||||| || ||||| || | | | ||||| || ||||| ||||||||| Sbjct 1020750 GCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAACGATCTCAGTGCAGAGG 1020809 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || || |||||| ||||||| || || ||| |||| ||||||||| |||||| Sbjct 1020810 TTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTG 1020869 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 || ||||| ||||| || ||||| |||||| | |||| | || ||| || | | Sbjct 1020870 TAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCTTC 1020929 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 ||| || ||| ||||| |||||||||| |||||| ||||| |||||| Sbjct 1020930 TGAGCTCGGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCATACAGAGCCTCG 1020989 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCC 244985 || || ||| || || | ||||| ||||| || | |||||||| | | ||| Sbjct 1020990 AATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTG--GGGCACATCAAAGTCC 1021047 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | || | | || || | || |||||| || || ||||||||||| || |||| | Sbjct 1021048 AGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACA 1021107 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 |||| | || | ||| ||| ||| |||||| | || || | || ||||||| Sbjct 1021108 GGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGA 1021167 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | ||| ||||||| ||||| | ||||| || | ||| || || ||||||||||| |||| Sbjct 1021168 CATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCT 1021227 Query 245166 GGTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAG 245224 |||| || || | || | |||||||| || || | || | || ||||| ||| Sbjct 1021228 GGTCGACGTATCTGGC-AGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAG 1021286 Query 245225 TGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCT 245284 ||||||||||| ||||| | |||| | | | || | || | || ||| Sbjct 1021287 GTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCG 1021346 Query 245285 AGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCC 245344 | || || || |||||| || | ||| || |||| | ||||| || ||||| Sbjct 1021347 ATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTCA 1021406 Query 245345 ATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG-GGGCTGCA 245403 |||||||| |||||||| | ||| ||||| |||||||||| | ||||| ||| | | Sbjct 1021407 ATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCT-GAGCTTGTGGGGTACC 1021465 Query 245404 CGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGT 245463 | |||||| || ||||| ||| ||||||||| | ||| || | || ||| || Sbjct 1021466 AGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGT 1021525 Query 245464 CTGGAGCAGAGCGTCGATGTTGTCGCC 245490 || || | | || |||||||| || Sbjct 1021526 CTCAAGGACACGCTCAATGTTGTCTCC 1021552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337653644560