Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq44 125 2e-23 seq35 95.1 3e-14 >seq44 Length=3047126 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| || || ||||| || ||||||| Sbjct 758543 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 758602 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | ||| || || ||||||||||||||||| || | || Sbjct 758603 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 758662 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | ||||| || || |||| ||| || || || Sbjct 758663 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCACC 758722 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 758723 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 758769 Score = 104 bits (114), Expect = 6e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || || | || || || ||||| || || ||| Sbjct 758263 CCACCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTC 758322 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || || ||||| |||||||| || ||| Sbjct 758323 AGGGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGG 758382 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || ||||| || || | |||| || || || Sbjct 758383 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCCACC 758442 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATA 288466 ||||| ||||| ||||| ||||| ||||||||||||| || Sbjct 758443 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGACTA 758482 Score = 100 bits (110), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||| || || ||||| || |||||| Sbjct 1396966 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 1396907 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || || ||||||| ||||| || || ||| Sbjct 1396906 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGG---TCCGGG 1396850 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || | || ||||| || || | ||| || || Sbjct 1396849 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCC 1396790 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||||||||| || || ||||||||||| |||||||| Sbjct 1396789 ACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1396740 >seq35 Length=1329723 Score = 95.1 bits (104), Expect = 3e-14 Identities = 170/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157 || || || | || ||| |||||||| | || ||| |||| ||| || || | || Sbjct 994305 GATGCCGTCAGAATCGAGCAAGAGTTCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGC 994246 Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCA 269217 ||||| ||| || ||||| || || || || || || || |||||| | || || Sbjct 994245 ATGAACGCCACCCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTCGTCGCT 994186 Query 269218 CTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCG 269277 || || | ||||| | ||||| || || ||||| | ||| ||||| || || Sbjct 994185 CTTGGCAACGAGAAGATTTACAAGTCCTCCAACCCCTTTGACTTCATGGAGAACATCTCC 994126 Query 269278 CTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA-ACGTCCTGGTGT 269336 || | || ||||| ||||||||||| ||||||||| |||| || || | | || ||||| Sbjct 994125 CTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTACCAGAAGGCC-GGTGT 994067 Query 269337 AATGAA 269342 ||||| Sbjct 994066 CATGAA 994061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652420023818