Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq44 125 2e-23
seq35 95.1 3e-14
>seq44
Length=3047126
Score = 125 bits (138), Expect = 2e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || || || | ||| || || ||||| || |||||||
Sbjct 758543 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 758602
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | ||| || || ||||||||||||||||| || | ||
Sbjct 758603 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 758662
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | ||||| || || |||| ||| || || ||
Sbjct 758663 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCACC 758722
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||| ||||| || ||||||||||| || |||||
Sbjct 758723 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 758769
Score = 104 bits (114), Expect = 6e-17
Identities = 155/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||| || || || | || || || ||||| || || |||
Sbjct 758263 CCACCACGAAGACGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTC 758322
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || || || || ||||| |||||||| || |||
Sbjct 758323 AGGGTGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGG 758382
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || ||||| || || | |||| || || ||
Sbjct 758383 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCCACC 758442
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATA 288466
||||| ||||| ||||| ||||| ||||||||||||| ||
Sbjct 758443 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGACTA 758482
Score = 100 bits (110), Expect = 7e-16
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || || || | ||| || || ||||| || ||||||
Sbjct 1396966 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 1396907
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || || ||||||| ||||| || || |||
Sbjct 1396906 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGG---TCCGGG 1396850
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || |||||||| || | || ||||| || || | ||| || ||
Sbjct 1396849 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCC 1396790
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || |||||||||||||| || || ||||||||||| ||||||||
Sbjct 1396789 ACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1396740
>seq35
Length=1329723
Score = 95.1 bits (104), Expect = 3e-14
Identities = 170/246 (69%), Gaps = 2/246 (1%)
Strand=Plus/Minus
Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGT 269157
|| || || | || ||| |||||||| | || ||| |||| ||| || || | ||
Sbjct 994305 GATGCCGTCAGAATCGAGCAAGAGTTCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGC 994246
Query 269158 ATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCA 269217
||||| ||| || ||||| || || || || || || || |||||| | || ||
Sbjct 994245 ATGAACGCCACCCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTCGTCGCT 994186
Query 269218 CTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCG 269277
|| || | ||||| | ||||| || || ||||| | ||| ||||| || ||
Sbjct 994185 CTTGGCAACGAGAAGATTTACAAGTCCTCCAACCCCTTTGACTTCATGGAGAACATCTCC 994126
Query 269278 CTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA-ACGTCCTGGTGT 269336
|| | || ||||| ||||||||||| ||||||||| |||| || || | | || |||||
Sbjct 994125 CTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTACCAGAAGGCC-GGTGT 994067
Query 269337 AATGAA 269342
|||||
Sbjct 994066 CATGAA 994061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179652420023818
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |