Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq35 120 7e-22 seq66 87.8 4e-12 >seq35 Length=1329723 Score = 120 bits (132), Expect = 7e-22 Identities = 374/566 (66%), Gaps = 11/566 (2%) Strand=Plus/Minus Query 243197 AGCGAAACGAGCTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAAT 243256 |||| ||| | || ||| ||||||| || | |||||| | | ||| ||||| | | Sbjct 994622 AGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGAAGGCTGACT 994563 Query 243257 GGGCTCAGAAGTGGCT--AGAACCCGGTAAAT-CATTTGCTGAGCGTCTCGTCGCCTGGG 243313 |||| |||||| | || || || | | |||||| |||| || || |||| | Sbjct 994562 GGGCCATCAAGTGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGCCTTGTTGCCTTTG 994503 Query 243314 TGTGCGTTGAAGGTATTCTGTTTTCCG-GGAGTTTCTGCG-CCATCTTTTGGCTGCGGAA 243371 ||| || ||||| || | ||| | |||| | ||| ||||||| ||||| ||| Sbjct 994502 CTGCCGTCGAGGGTAT-CT-TCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAA 994445 Query 243372 CAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCT 243431 | |||| | ||||||||||| | || |||||| ||||| ||| ||||||||||| Sbjct 994444 GAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGCCT 994385 Query 243432 TCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAA-GCTACCATTCGAAA 243490 ||| | || | | || | | || | || ||||| || | || || | Sbjct 994384 GCACACCGACTTTGCTTGCCTGCTCCACTCTCACCTGAAGAACCGCGCCAGCAAG-GAGA 994326 Query 243491 CGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTA 243550 || |||||||||| || || || || ||| | || ||| | ||| ||| Sbjct 994325 TTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCAAGAGTTCTTGACCGAGGCTC 994266 Query 243551 TTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAG 243610 | || || || | ||||||||| | || ||| |||||||| || || || | Sbjct 994265 TCCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATTGAGTTTGTTG 994206 Query 243611 CCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTG 243670 |||| || | || |||| ||||| | ||||| | ||||| ||| |||||||||| Sbjct 994205 CCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAGATTTACAAGTCCTCCAACCCCTTTG 994146 Query 243671 CCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTG 243730 ||| |||||| ||| || || || || || ||||||||||| ||||||||| | | Sbjct 994145 ACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCG 994086 Query 243731 ATTATCA-ACGCCCTGGTGTGATGAA 243755 | || || | | || ||||| ||||| Sbjct 994085 AGTACCAGAAGGCC-GGTGTCATGAA 994061 >seq66 Length=2244893 Score = 87.8 bits (96), Expect = 4e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 318797 CGCCCCATCGGTGTTGGAGTTCAAGGACTTCAGGATGTATTCTTCAAACTGAAGCTCCCA 318856 || ||||| |||||||| ||||| || ||| || | ||| || ||| || || Sbjct 1020592 CGACCCATTGGTGTTGGTGTTCAGGGTCTTGCTGACGCTTTCCTCGCTCTGCGTCTTCCT 1020533 Query 318857 TTCGACTCATCGGAAGCCAGGGATCTCAACCGCGAAATCTTCGAACATATCTACTACGCC 318916 ||||| ||| | ||||| | || | ||| ||||||| || |||||| |||| Sbjct 1020532 TTCGAATCACCCGAAGCTCGCGAGTTGAACAAGCAAATCTTTGAGACCATCTACCACGCT 1020473 Query 318917 GCTGTAGAAGCATCGATAGAACTCGCTGAGATCCACGGTCCTTATCCAACATTCGAAGGG 318976 || | || ||||| || || | || ||||| | ||||||||| ||||| | || Sbjct 1020472 GCCCTCGAGGCATCTATGGAGATTGCCAAGATCGAGGGTCCTTATGAGTCATTCAAGGGA 1020413 Query 318977 TCTCCCGCGAGCAAAGGCATCCTGCAGTACCACTTGTGGGATGTCA 319022 || ||||| ||||||| || |||| ||||||||||||||| Sbjct 1020412 TCACCCGCCTCTGAAGGCATTCTCCAGTTTGACTTGTGGGATGTCA 1020367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102878148884850