Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq35 120 7e-22
seq66 87.8 4e-12
>seq35
Length=1329723
Score = 120 bits (132), Expect = 7e-22
Identities = 374/566 (66%), Gaps = 11/566 (2%)
Strand=Plus/Minus
Query 243197 AGCGAAACGAGCTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAAT 243256
|||| ||| | || ||| ||||||| || | |||||| | | ||| ||||| | |
Sbjct 994622 AGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGAAGGCTGACT 994563
Query 243257 GGGCTCAGAAGTGGCT--AGAACCCGGTAAAT-CATTTGCTGAGCGTCTCGTCGCCTGGG 243313
|||| |||||| | || || || | | |||||| |||| || || |||| |
Sbjct 994562 GGGCCATCAAGTGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGCCTTGTTGCCTTTG 994503
Query 243314 TGTGCGTTGAAGGTATTCTGTTTTCCG-GGAGTTTCTGCG-CCATCTTTTGGCTGCGGAA 243371
||| || ||||| || | ||| | |||| | ||| ||||||| ||||| |||
Sbjct 994502 CTGCCGTCGAGGGTAT-CT-TCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAA 994445
Query 243372 CAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCT 243431
| |||| | ||||||||||| | || |||||| ||||| ||| |||||||||||
Sbjct 994444 GAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGCCT 994385
Query 243432 TCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAA-GCTACCATTCGAAA 243490
||| | || | | || | | || | || ||||| || | || || |
Sbjct 994384 GCACACCGACTTTGCTTGCCTGCTCCACTCTCACCTGAAGAACCGCGCCAGCAAG-GAGA 994326
Query 243491 CGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTA 243550
|| |||||||||| || || || || ||| | || ||| | ||| |||
Sbjct 994325 TTATCCGTGAAATCATCACTGATGCCGTCAGAATCGAGCAAGAGTTCTTGACCGAGGCTC 994266
Query 243551 TTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAG 243610
| || || || | ||||||||| | || ||| |||||||| || || || |
Sbjct 994265 TCCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATTGAGTTTGTTG 994206
Query 243611 CCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTG 243670
|||| || | || |||| ||||| | ||||| | ||||| ||| ||||||||||
Sbjct 994205 CCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAGATTTACAAGTCCTCCAACCCCTTTG 994146
Query 243671 CCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTG 243730
||| |||||| ||| || || || || || ||||||||||| ||||||||| | |
Sbjct 994145 ACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCG 994086
Query 243731 ATTATCA-ACGCCCTGGTGTGATGAA 243755
| || || | | || ||||| |||||
Sbjct 994085 AGTACCAGAAGGCC-GGTGTCATGAA 994061
>seq66
Length=2244893
Score = 87.8 bits (96), Expect = 4e-12
Identities = 155/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 318797 CGCCCCATCGGTGTTGGAGTTCAAGGACTTCAGGATGTATTCTTCAAACTGAAGCTCCCA 318856
|| ||||| |||||||| ||||| || ||| || | ||| || ||| || ||
Sbjct 1020592 CGACCCATTGGTGTTGGTGTTCAGGGTCTTGCTGACGCTTTCCTCGCTCTGCGTCTTCCT 1020533
Query 318857 TTCGACTCATCGGAAGCCAGGGATCTCAACCGCGAAATCTTCGAACATATCTACTACGCC 318916
||||| ||| | ||||| | || | ||| ||||||| || |||||| ||||
Sbjct 1020532 TTCGAATCACCCGAAGCTCGCGAGTTGAACAAGCAAATCTTTGAGACCATCTACCACGCT 1020473
Query 318917 GCTGTAGAAGCATCGATAGAACTCGCTGAGATCCACGGTCCTTATCCAACATTCGAAGGG 318976
|| | || ||||| || || | || ||||| | ||||||||| ||||| | ||
Sbjct 1020472 GCCCTCGAGGCATCTATGGAGATTGCCAAGATCGAGGGTCCTTATGAGTCATTCAAGGGA 1020413
Query 318977 TCTCCCGCGAGCAAAGGCATCCTGCAGTACCACTTGTGGGATGTCA 319022
|| ||||| ||||||| || |||| |||||||||||||||
Sbjct 1020412 TCACCCGCCTCTGAAGGCATTCTCCAGTTTGACTTGTGGGATGTCA 1020367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102878148884850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |