Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq66 282 4e-71 >seq66 Length=2244893 Score = 282 bits (312), Expect = 4e-71 Identities = 1082/1676 (65%), Gaps = 46/1676 (3%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| || |||||| ||| || ||||| ||| | |||||| Sbjct 1021666 AACTACCAATACTTCGGCTTCAAGACACTGGAGCGGTCATATCTCCTGAAGCTTGATGGC 1021607 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || |||||||| || || || | ||||| || || | || || || || Sbjct 1021606 AAGATTGTTGAGCGACCACAGCACATGATTATGCGTGTGGCTGTTGGCGTTTGGGGAGAC 1021547 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 |||| | ||| | | | | | |||| ||| | |||| ||| Sbjct 1021546 AACATTGAGCGTGTCCTTGAGACATACCACCTCATGTCCAGCAAATTCTTTACCCATGCC 1021487 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954 | || ||||| |||||||| || ||||| | ||| |||| || || |||||| || Sbjct 1021486 TCTCCCACCCTCTTCAACGCTGGTACCCCACAAGCTCAGCTGTCCTCATGCTTCCTGGTG 1021427 Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014 | |||| |||| ||| || || | ||||| || ||| ||||| | || Sbjct 1021426 GACATGAAGGACGACAGCATTGAGGGTATCTACGACACTCTAAAGACATGTGCCATGATT 1021367 Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCCT 94072 || || || || || ||||| | | |||||| |||| ||||| | ||| || | Sbjct 1021366 TCCAAGATGGCTGGTGGTATCGGCCTGAACGTCCAC--CGTATCCGTGCTACGGGCTCTT 1021309 Query 94073 ACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACA 94132 |||| ||| ||||| || ||||||||||| || |||| ||||| || |||||||||| Sbjct 1021308 ACATTGCCGGCACCAACGGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAACA 1021249 Query 94133 ACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATC 94192 || | || | ||||| ||||||||||| | | | ||| | || || |||| | Sbjct 1021248 ACACTGCCAGATACGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACC 1021189 Query 94193 TCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACG 94252 ||||||| |||||||| || || | ||| | ||||| || |||||||||||||| | Sbjct 1021188 TCGAGCCTTGGCACGCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGG 1021129 Query 94253 ATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 | || | ||| | ||||| ||| |||||||||| | || || || || ||||| | Sbjct 1021128 AAGAGGTCCGTGCCCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGC 1021069 Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372 | || ||||| |||| | ||||| | | | || ||||| ||||| || || || | | Sbjct 1021068 GTGTTGAGAAGAACTTGGACTGGACTTTGATGTGCCCCAACGAATGCCCTGGCCTTGCTG 1021009 Query 94373 ACGTTTGTGGATCG-CGTTTTGAAGACT-TGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430 || | ||| || | || || || |||||| ||||| | ||||||||| Sbjct 1021008 ACTGCTATGG--CGAAGAATTCGAGGCTCTGTATGAGAAGTACGAGAAGGAGGGCAAGGG 1020951 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490 | ||| ||| ||| |||||||||| | ||| | || | ||| ||||| Sbjct 1020950 TCGCAAGACTATCCGAGCTCAGAAGCTGTGGTACTCCATCCTAGAGGCCCAGACTGAGAC 1020891 Query 94491 GGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550 |||| |||| || | | |||||| | |||| |||| ||||||| || |||| Sbjct 1020890 TGGTAACCCCTTTATGCTTTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCT 1020831 Query 94551 CGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGA 94610 || ||| ||||| || || ||||| ||||| || ||||| || | || ||||| Sbjct 1020830 GGGAACCATCCGAAGCTCCAACCTCTGCACTGAGATCGTTGAGTACTCTGCCCCTGACGA 1020771 Query 94611 GATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACAC 94670 | | ||||| || ||| ||| ||| | || | | || || ||| ||| | Sbjct 1020770 GGTCGCTGTCTGCAACTTGGCCTCTTTGGCTCTCCCTGCCTTTGT-CGA-----CTATA- 1020718 Query 94671 GTCTACTGCTTCGTTCGATCTGGAGGAGCTT-GTGAACTTCGCGGGAAGGATGGTCTTGA 94729 | | ||| | | || | || ||||| || || | | || | ||| | Sbjct 1020717 -ACGAAGGCTGC-TATGACTTTAAGAAGCTTCACGATGTTACCAAGGTGG-TTGTCCGTA 1020661 Query 94730 ACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACC 94789 |||| ||| | | ||||| ||||| ||||||||| | |||||| ||| ||| Sbjct 1020660 ACCTCAACCGCATCATCGATGTGAACTACTACCCCGTTCAGGAGGCTCGCAACAGTAACA 1020601 Query 94790 TGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGC 94849 || || ||||| || | || || |||||| | || ||||| | | ||| Sbjct 1020600 GCCGCCACCGACCCATTGGTGTTGGTGTTCAGGGTCTTGCTGACGCTTTCCTCGCTCTGC 1020541 Query 94850 GTCTGCCCTACGACTCTGTCGACGC-GGCGGGTTTGAATTTGAACATATTCGAAAGCATT 94908 |||| || | ||| || ||| || ||| | ||||| | | || || || | ||| Sbjct 1020540 GTCTTCCTTTCGAATCACCCGAAGCTCGCGAG-TTGAACAAGCAAATCTTTGAGACCATC 1020482 Query 94909 TATTACGGGGCCATGAAACAATCCGTCCA-CTTGGCCAGATCGGACGGCGGGCCACACGA 94967 || ||| ||| | | ||| | | ||| | |||| || || || | || Sbjct 1020481 TACCACGCTGCCCTCGAGGCATCTATGGAGATTGCCAAGAT----CGAGGGTCCTTATGA 1020426 Query 94968 ATCGTTCCGCGGATCGC---CCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGT 95024 || ||| ||||| | ||| ||| |||||| | ||||| ||| | |||| ||| Sbjct 1020425 GTCATTCAAGGGATCACCCGCCTCTGAA---GGCATTCTCCAGTTTGACTTGTGGGATGT 1020369 Query 95025 GAAGCCCTCGGGTCTGTACGACTGGGA--AGCTCTACGCGCTGATGTTATCAAACACGGT 95082 |||||| | | |||| || ||||| |||| | | || || ||| | |||||| Sbjct 1020368 CAAGCCCACTGACCTGTGGGAGTGGGACTCGCTCAAGGAGCAGA--TTAAGGAGCACGGT 1020311 Query 95083 GTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGC 95142 | ||| |||| || |||||||||||||| ||| ||| | |||||||| ||| Sbjct 1020310 ATTCGCAACAGTTTGCTCGTCGCCCCCATGCCCACTGCCAGCACTTCCCAGATCCTGGGC 1020251 Query 95143 AACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGG 95202 ||||| || | ||||| |||| |||||||||| | ||| | | || || || || || Sbjct 1020250 AACAATGAATGCTTCGAGCCCTACACCTCCAACATCTACCAGCGACGTGTCCTTGCTGGC 1020191 Query 95203 GAATTCCCCGTCATCAACAAGCACCTCCT-ACGGGACCTGACGTCTCTGGGTGTGTGGGG 95261 || |||| || ||||| || || | || | || || || || | ||| Sbjct 1020190 GAGTTCCAGGTTGTCAACCCCTGGCTTCTCAAGGATCTTGTCGATACT-GGCCTCTGGTC 1020132 Query 95262 TGACAAGGTCAAGAACC----AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGC 95317 || | ||||||| | |||| | ||||| || |||||||||| || Sbjct 1020131 CGATGCTATGAAGAACCGCATCATTGCT----GAGAACGGTTCTATCCAGAACATTCCCA 1020076 Query 95318 AAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 | || || | ||||||||||| || |||||||| || ||||||||| | |||||| Sbjct 1020075 ACATTCCCGCCGACATCAAGGCCCTGTACAAGACTGTTTGGGAGATCTCTCAGCGC 1020020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722389890760