Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq35 167 2e-36 seq44 113 4e-20 >seq35 Length=1329723 Score = 167 bits (184), Expect = 2e-36 Identities = 507/769 (66%), Gaps = 37/769 (5%) Strand=Plus/Minus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 |||||||||||| || || ||| ||| | |||| ||||| || ||| |||| || Sbjct 994830 AACGATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCTGCCTCCGACGGC 994771 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGG-AACGTTCCGGAACTCGAGGCGCA 52204 || || ||| ||||| ||||| | |||||| | |||| | | |||||| | Sbjct 994770 ATTGTCAACGAGAACCTGGTCGAG-CGTTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCG 994712 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 || ||| || ||| || | | || ||| | | ||| | |||| ||| ||||| Sbjct 994711 ATGCTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCT 994652 Query 52265 CATTGAGCAGCTGATAAAAGATGAGCA---CGAGCGCGACACGCTGCTGAATGCGTTCGA 52321 ||| || || || ||| ||||| | ||||| || || | || || | || Sbjct 994651 CATCGA-CACCTACGTCAAG--GAGCACAGCCAGCGCAACTACCTCTTCAACGCCATTGA 994595 Query 52322 GCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACAC 52381 | | | || ||| | || || |||||| | ||||| || ||||||||| || | | Sbjct 994594 GACCATTCCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGA 994535 Query 52382 CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGG 52441 | | | | || ||||| | || ||||| || |||||||| | || || ||| Sbjct 994534 CTCTTCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGG 994475 Query 52442 CAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAG 52501 ||||||| ||||||| | | || | || ||| | ||||| |||||||| ||| Sbjct 994474 AGCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTC 994415 Query 52502 CAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGC---CTCTACT- 52557 ||||||| | || || || ||||| || |||||||| |||||||| ||| ||| ||| Sbjct 994414 CAACGAGCTCATCTCTCGTGACGAGGGCCTGCACACCGACTTTGCTTGCCTGCTCCACTC 994355 Query 52558 --AC---AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCC-TGAGCATGTTCA 52611 || |||| |||| | | | ||| | |||| ||| || ||| Sbjct 994354 TCACCTGAAGAACCGCGCCAGCAA------------GGAGATTATCCGTGA-AATCATCA 994308 Query 52612 AGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGG 52671 || || || ||||| | ||||| || || | || || || | ||||||| Sbjct 994307 CTGATGCCGTCAGAATCGAGCAAGAGTTCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGG 994248 Query 52672 GCATGAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTG 52730 |||||||||| || | ||| ||||||| |||||||| || ||||||||| | || Sbjct 994247 GCATGAACGC-CACCCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTCGT- 994190 Query 52731 CAGCTC-GGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACA 52788 |||| |||| | | ||| | ||| | ||| || ||||| || ||| | |||| Sbjct 994189 -CGCTCTTGGCAACGAGAAGATTTACAAGTCCTCCAACCCCTTTGACTTCATGGAGAACA 994131 Query 52789 TTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | || || | |||||||||||||| ||||||||||| ||||||||||| Sbjct 994130 TCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTA 994082 >seq44 Length=3047126 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | || | | | |||||||| || ||||||||||||||| Sbjct 1396966 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 1396907 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || ||||| | | |||| | ||||| |||||||| || Sbjct 1396906 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGA 1396847 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||||| ||||||||| Sbjct 1396846 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1396787 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||| || || || || || || || ||||||||||| Sbjct 1396786 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1396740 Score = 105 bits (116), Expect = 7e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || ||| || ||||||||||| || || | Sbjct 758576 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCG 758635 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| ||||| ||||| || || || ||||| ||| || || | | Sbjct 758636 AAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACA 758695 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||||| ||||||||||||| || | || || || || || || || Sbjct 758696 TTG-TCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 758754 Query 138600 TACAAAAATCTGCATGG 138616 || || || ||||||| Sbjct 758755 GACGAAGATTTGCATGG 758771 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||| ||||||| || || |||||| || || ||||| | | Sbjct 758296 GACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCA 758355 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| ||||| || ||||| ||| || || | Sbjct 758356 AAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACG 758415 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| |||| ||||||||||||| || | || || || || ||||| || Sbjct 758416 TTGTCAATGGTATCGGATGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTG 758475 Query 138601 AC 138602 || Sbjct 758476 AC 758477 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || ||| || || || ||||| | | Sbjct 758070 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAA 758129 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||| || ||||| ||||| || || ||||| || ||||| ||| | |||| || | | Sbjct 758130 GATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTC-CTGAATCTTTGACTTGACGT 758188 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | ||| || | |||||||| || | || | || || || |||| ||| || Sbjct 758189 TG-TCGATGGTATCAGATGACTCCACTTCCAGTGTGATTGTCTTGCCGGTCAAAGTCTTG 758247 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 758248 ACAAAGATCTGCAT 758261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261587370320