Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq35 167 2e-36
seq44 113 4e-20
>seq35
Length=1329723
Score = 167 bits (184), Expect = 2e-36
Identities = 507/769 (66%), Gaps = 37/769 (5%)
Strand=Plus/Minus
Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145
|||||||||||| || || ||| ||| | |||| ||||| || ||| |||| ||
Sbjct 994830 AACGATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCTGCCTCCGACGGC 994771
Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGG-AACGTTCCGGAACTCGAGGCGCA 52204
|| || ||| ||||| ||||| | |||||| | |||| | | |||||| |
Sbjct 994770 ATTGTCAACGAGAACCTGGTCGAG-CGTTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCG 994712
Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264
|| ||| || ||| || | | || ||| | | ||| | |||| ||| |||||
Sbjct 994711 ATGCTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCT 994652
Query 52265 CATTGAGCAGCTGATAAAAGATGAGCA---CGAGCGCGACACGCTGCTGAATGCGTTCGA 52321
||| || || || ||| ||||| | ||||| || || | || || | ||
Sbjct 994651 CATCGA-CACCTACGTCAAG--GAGCACAGCCAGCGCAACTACCTCTTCAACGCCATTGA 994595
Query 52322 GCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACAC 52381
| | | || ||| | || || |||||| | ||||| || ||||||||| || | |
Sbjct 994594 GACCATTCCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGA 994535
Query 52382 CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGG 52441
| | | | || ||||| | || ||||| || |||||||| | || || |||
Sbjct 994534 CTCTTCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGG 994475
Query 52442 CAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAG 52501
||||||| ||||||| | | || | || ||| | ||||| |||||||| |||
Sbjct 994474 AGCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTC 994415
Query 52502 CAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGC---CTCTACT- 52557
||||||| | || || || ||||| || |||||||| |||||||| ||| ||| |||
Sbjct 994414 CAACGAGCTCATCTCTCGTGACGAGGGCCTGCACACCGACTTTGCTTGCCTGCTCCACTC 994355
Query 52558 --AC---AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCC-TGAGCATGTTCA 52611
|| |||| |||| | | | ||| | |||| ||| || |||
Sbjct 994354 TCACCTGAAGAACCGCGCCAGCAA------------GGAGATTATCCGTGA-AATCATCA 994308
Query 52612 AGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGG 52671
|| || || ||||| | ||||| || || | || || || | |||||||
Sbjct 994307 CTGATGCCGTCAGAATCGAGCAAGAGTTCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGG 994248
Query 52672 GCATGAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTG 52730
|||||||||| || | ||| ||||||| |||||||| || ||||||||| | ||
Sbjct 994247 GCATGAACGC-CACCCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTCGT- 994190
Query 52731 CAGCTC-GGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACA 52788
|||| |||| | | ||| | ||| | ||| || ||||| || ||| | ||||
Sbjct 994189 -CGCTCTTGGCAACGAGAAGATTTACAAGTCCTCCAACCCCTTTGACTTCATGGAGAACA 994131
Query 52789 TTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
| || || | |||||||||||||| ||||||||||| |||||||||||
Sbjct 994130 TCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTA 994082
>seq44
Length=3047126
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| |||| || | || | | | |||||||| || |||||||||||||||
Sbjct 1396966 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 1396907
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || |||||||| || ||||| | | |||| | ||||| |||||||| ||
Sbjct 1396906 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGA 1396847
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| || || ||||| ||| || || | | || | |||||||| |||||||||
Sbjct 1396846 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1396787
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | ||| || || || || || || || |||||||||||
Sbjct 1396786 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1396740
Score = 105 bits (116), Expect = 7e-18
Identities = 143/197 (73%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| || ||| || ||||||||||| || || |
Sbjct 758576 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCG 758635
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| |||||||| ||||| ||||| || || || ||||| ||| || || | |
Sbjct 758636 AAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACA 758695
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | ||||||| ||||||||||||| || | || || || || || || ||
Sbjct 758696 TTG-TCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 758754
Query 138600 TACAAAAATCTGCATGG 138616
|| || || |||||||
Sbjct 758755 GACGAAGATTTGCATGG 758771
Score = 104 bits (114), Expect = 2e-17
Identities = 132/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||| ||||||| || || |||||| || || ||||| | |
Sbjct 758296 GACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCAAGCTGCTTACCAGCA 758355
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| |||||||| ||||| ||||| ||||| || ||||| ||| || || |
Sbjct 758356 AAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACG 758415
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | ||| |||| ||||||||||||| || | || || || || ||||| ||
Sbjct 758416 TTGTCAATGGTATCGGATGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTG 758475
Query 138601 AC 138602
||
Sbjct 758476 AC 758477
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||||||| || || ||| || || || ||||| | |
Sbjct 758070 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAA 758129
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540
||| || ||||| ||||| || || ||||| || ||||| ||| | |||| || | |
Sbjct 758130 GATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTC-CTGAATCTTTGACTTGACGT 758188
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
|| || | ||| || | |||||||| || | || | || || || |||| ||| ||
Sbjct 758189 TG-TCGATGGTATCAGATGACTCCACTTCCAGTGTGATTGTCTTGCCGGTCAAAGTCTTG 758247
Query 138601 ACAAAAATCTGCAT 138614
||||| ||||||||
Sbjct 758248 ACAAAGATCTGCAT 758261
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261587370320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |