Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq44 134 1e-26
seq35 114 1e-20
seq42 96.9 3e-15
>seq44
Length=3047126
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| |||| || | || ||||| || || || ||||| |||| |
Sbjct 1396966 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 1396907
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || ||||| |||||||||||||||| || || ||
Sbjct 1396906 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGA 1396847
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| || ||||| ||||| ||| |||||| | | ||| ||
Sbjct 1396846 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT-CGATGGTGTCGGAAGACTCCAC 1396788
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | ||| || || || || || || || |||||||||||
Sbjct 1396787 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1396740
Score = 113 bits (124), Expect = 4e-20
Identities = 138/186 (74%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || || || |||||||||| || |||||| || || ||||| || |||
Sbjct 758293 GTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCAAGCTGCTTACCA 758352
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||| | |||||||| |||||||| || |||||||||||| ||| || ||||
Sbjct 758353 GCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 758412
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| || | ||| || | ||| || |||| ||| | || |||||||| |||||
Sbjct 758413 ACGTTG-TCAATGGTATCGGATGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAGT 758471
Query 127096 TTTTAC 127101
|| ||
Sbjct 758472 CTTGAC 758477
Score = 111 bits (122), Expect = 1e-19
Identities = 144/194 (74%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| || || || ||||| |||| || |||||| || || ||||| || |||||| |
Sbjct 758070 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAA 758129
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGA-GT 127039
||| | |||||||| || || || || |||||||||||| ||| | | || ||||| ||
Sbjct 758130 GATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCC-TGAATCTTTGACTTGACGT 758188
Query 127040 TGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 127099
|| |||| ||| || | ||| ||||| | || | || |||||||||| ||| ||
Sbjct 758189 TG-TCGATGGTATCAGATGACTCCACTTCCAGTGTGATTGTCTTGCCGGTCAAAGTCTTG 758247
Query 127100 ACAAAAATCTGCAT 127113
||||| ||||||||
Sbjct 758248 ACAAAGATCTGCAT 758261
Score = 107 bits (118), Expect = 2e-18
Identities = 143/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| || || || ||| || || || || |||
Sbjct 758573 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCA 758632
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||||| |||||||| || ||||| ||||||||||||||| ||| || |||
Sbjct 758633 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTC 758692
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||||| | | ||| || |||| ||| | || |||||||| || ||
Sbjct 758693 ACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 758752
Query 127097 TTTACAAAAATCTGCATGG 127115
|| || || || |||||||
Sbjct 758753 TTGACGAAGATTTGCATGG 758771
>seq35
Length=1329723
Score = 114 bits (126), Expect = 1e-20
Identities = 283/426 (66%), Gaps = 15/426 (4%)
Strand=Plus/Minus
Query 47159 CGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGG 47218
||||||||| |||||||| || |||||| | || || | | || | | |||
Sbjct 994498 CGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGG 994439
Query 47219 AGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACAC 47278
| ||||| ||||| || || ||||||||| ||||| | ||||| |||||||||||
Sbjct 994438 TCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGCCTGCACAC 994379
Query 47279 CAACTTTGCCTGTCT---CTACTA-CAACACTAGAGTCGATCAA--AAGTTGGACGTGCC 47332
| ||||||| || || | ||| || | ||| || | | ||| | |
Sbjct 994378 CGACTTTGCTTGCCTGCTCCACTCTCACCTGAAGAACCGCGCCAGCAAGGAGATTAT--- 994322
Query 47333 CACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGC 47392
|||| || || | | || |||||| || ||| ||||| || |||||||
Sbjct 994321 --CCGT----GAAATCATCACTGATGCCGTCAGAATCGAGCAAGAGTTCTTGACCGAGGC 994268
Query 47393 TCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGT 47452
||| ||| || | |||| |||||||| |||||| ||||||| || |||||
Sbjct 994267 TCTCCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATTGAGTTTGT 994208
Query 47453 CGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATT 47512
||||| || |||||||| || | ||||||||| | || || || ||
Sbjct 994207 TGCCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAGATTTACAAGTCCTCCAACCCCTT 994148
Query 47513 CGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGG 47572
|| || ||| | ||||| || || | |||||||||||||| ||||||||||| |||||
Sbjct 994147 TGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGG 994088
Query 47573 CGAATA 47578
||| ||
Sbjct 994087 CGAGTA 994082
>seq42
Length=797865
Score = 96.9 bits (106), Expect = 3e-15
Identities = 110/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017
||| || ||||| || |||||| ||||||||||||||||||| || || || ||||||||
Sbjct 706037 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCCGGGGGGATTCCCTCCTT 706096
Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
|||| ||| || ||||| | |||| ||||| | |||||| || | ||| |
Sbjct 706097 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGAT 706156
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
|| ||||| ||||| || || || |||
Sbjct 706157 GGTCTTGCCCGTCAGGGTCTTCACGAAA 706184
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500021367440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |