Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq44 104 2e-17 >seq44 Length=3047126 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || || || || || || || ||||| ||||| || || ||||| Sbjct 1396966 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 1396907 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| || | || || || || | |||||||| ||||||||||| ||| Sbjct 1396906 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGA 1396847 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || |||| || | || | ||||||||||||||| || Sbjct 1396846 ATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCAC 1396788 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||| || || || || || || || ||||| |||||| Sbjct 1396787 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATC 1396739 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || || || || ||||| ||||| || || ||| Sbjct 758540 ATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 758599 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | || | ||| || | ||| || || ||| | |||| || |||||||| | Sbjct 758600 --GACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAG 758657 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | |||||||| || || || || || || || | || | ||||||||||||| Sbjct 758658 GAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACT 758717 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| || | || |||||||| || || || || || |||||||| Sbjct 758718 CCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 758769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002459844760