Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq66 237 2e-57
seq35 138 1e-27
>seq66
Length=2244893
Score = 237 bits (262), Expect = 2e-57
Identities = 1167/1832 (64%), Gaps = 43/1832 (2%)
Strand=Plus/Plus
Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585
||||||| || ||| ||| |||| | || ||||||||||| || |||||||| |
Sbjct 1019836 TGAACTGGATAGGTGCAGCCGCAGCCTGGGTACGCAGGTAGTACATGCCAGTCTTGAGAC 1019895
Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645
| |||||||| || | ||||| || | |||| | ||| ||| | ||||
Sbjct 1019896 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGT 1019955
Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705
|| ||||| ||||| ||||| ||||| || || || || | ||| | | |
Sbjct 1019956 GGATGTTCAAGGACTGGGACTGATCAATGAAAGCACCACGGTCGGCTGACATCTGGACGA 1020015
Query 115706 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 115765
| | ||| ||||| ||||| |||| ||| ||| || || | || || |
Sbjct 1020016 TGTGGCGCTGAGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGAATGT 1020075
Query 115766 CCACGATATTTTGGATAGAGCCAC---CTGCCTTGACCATGAGATCCTTCATATCCTTTG 115822
|| || |||||||| || | || ||| || | | ||||||| | | |
Sbjct 1020076 TGGGAATGTTCTGGATAGAACCGTTCTCAGCAATGA---TGCGGTTCTTCATAGCATCGG 1020132
Query 115823 ACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAACAAAC 115878
||||||| ||| | | ||||||| | | ||| | |||||||| |||
Sbjct 1020133 ACCAGAGGCCAGTATCGACAAGATCCTTGAGAAGCCAGGGG----TTGACAACCTGGAAC 1020188
Query 115879 TCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTG 115938
|| || || ||| |||| | | |||||||||| ||||| ||||| ||||| ||||||
Sbjct 1020189 TCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTG 1020248
Query 115939 TTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGG 115998
|| |||| ||| |||| ||| ||| ||||||||||| || | ||| | ||||||||
Sbjct 1020249 TTGCCCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGA 1020308
Query 115999 AGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGT--CGTAGTTGAGCTTTGTCT 116056
| ||| | || |||| | |||||||| | |||||| | | || | || | | ||
Sbjct 1020309 ATACCGTGCTCCTTAATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAG--TGGGCT 1020366
Query 116057 CCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCT 116116
| ||||||| ||||||||||| || |||| || || || ||||||| |||| ||
Sbjct 1020367 TGACATCCCACAAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACT 1020426
Query 116117 CATATGGGCCCTCAACCTCCGCCA-ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATT 116175
|||| || ||||| | || || | | | || | ||||||||||| ||||| || ||
Sbjct 1020427 CATAAGGACCCTCGATCTTGGCAATCTCCATAGAT-GCCTCGAGGGCAGCGTGGTAGATG 1020485
Query 116176 GTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCAC 116235
|||||||| || | |||| | || ||| || || || | |||| |||
Sbjct 1020486 GTCTCAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTGATTCGAAAGGAAGAC-GCAG 1020544
Query 116236 A-AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 116294
| | || | || || ||||| || ||||| | ||||| || || || | | ||
Sbjct 1020545 AGCGAGGAAAGCGTCAGCAAGACCCTGAACACCAACACCAATGGGTCGGTGGCGGCTGTT 1020604
Query 116295 AGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 116354
| || ||||| || ||||| || | ||| |||||| | | || || ||
Sbjct 1020605 ACTGTTGCGAGCCTCCTGAACGGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACG 1020664
Query 116355 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT 116414
| || ||||| || | || |||||||| | | ||| | | || | | |
Sbjct 1020665 GACAACCACCTTGGTAACATCGTGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTATAGTC 1020724
Query 116415 GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 116474
|||| | ||| || || | || |||| || || |||| | ||| || |||
Sbjct 1020725 GACAAAGGCAGGGAGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGA 1020784
Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534
|||||| | || || || || | || || || ||||| |||| |||||| || ||
Sbjct 1020785 GTACTCAACGATCTCAGTGCAGAGGTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTT 1020844
Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594
||| ||| || ||||||||||| |||||| | || | || ||||| || ||||
Sbjct 1020845 GCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGC 1020904
Query 116595 CTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAG--TGGCGTTGGCTCGCCCCTC 116651
|| || || | | ||| | | || | ||| | | || | ||| || | |||||
Sbjct 1020905 CTCTAGGATGGAGTACCACAGCTTCTG-AGCTCGGATAGTCTTGCG-ACCCTTG-CCCTC 1020961
Query 116652 CTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTG 116710
|| ||||||||| || || ||||| || ||||| ||| ||| || | || || |
Sbjct 1020962 CTTCTCGTACTTCTCATACAGAGCCTCGAATTCTTC-GCCATAGCAGTCAGCAAGGCCAG 1021020
Query 116711 GTGCCTT-ATCTGGACAGAAGAGAGACCATTGACCA--CCCTCCTCAACCCGCTTCATGA 116767
| || || | || || | | || ||| | ||| || |||||| ||||||||||
Sbjct 1021021 G-GCATTCGTTGGGGCACATCAAAGTCCA--GTCCAAGTTCTTCTCAACACGCTTCATGA 1021077
Query 116768 AGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCT 116827
| || || ||||||||||| || ||| || || || || | ||||| | || |
Sbjct 1021078 ACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGT 1021137
Query 116828 GATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCG 116887
| || || | || | || || | || ||| |||||||| || || ||||| | |
Sbjct 1021138 GGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGG 1021197
Query 116888 CGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATA 116944
| | | || ||| ||| |||||| || || || || || ||| || |
Sbjct 1021198 CAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGA 1021257
Query 116945 CGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGT 117004
| |||||||| || |||||||| | || || || || || ||| |||
Sbjct 1021258 CTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCG 1021317
Query 117005 TGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGC 117064
| || | || | ||||| || || || ||||| || ||| ||| || || || |
Sbjct 1021318 TAGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCAC 1021377
Query 117065 ACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC 117124
| | | ||| || ||||||| || || || ||| |||| | | | |||||||
Sbjct 1021378 ATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGC 1021437
Query 117125 AGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGA 117184
| |||| || | ||| |||||||||||||||||||| || | || ||| | |
Sbjct 1021438 ATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAA 1021497
Query 117185 ACA--TACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTG 117242
| | | || |||||| | ||| ||||| | |||| ||||| || ||
Sbjct 1021498 AGAATTTGCT--GGACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCA 1021555
Query 117243 AATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAG 117302
|| || | | || ||||||| ||||| || ||| || | | | ||||| ||
Sbjct 1021556 AACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAG 1021615
Query 117303 CCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 117334
| || |||| || | ||||| |||||||
Sbjct 1021616 CTTCAGGAGATATGACCGCTCCAGTGTCTTGA 1021647
>seq35
Length=1329723
Score = 138 bits (152), Expect = 1e-27
Identities = 349/522 (67%), Gaps = 9/522 (2%)
Strand=Plus/Plus
Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578
|||||| || ||| || ||||||||||| |||||||| || || |||||| ||| ||
Sbjct 994369 AGCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCC 994428
Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638
||||||||||| | |||||| | |||||| || | ||| | || |||||||||
Sbjct 994429 AGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGAT 994488
Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAA 127697
||||| || || || |||| || |||| |||||||| | | | |||| | |
Sbjct 994489 ACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGA-AGAGTCCTTGTCCTGGA 994547
Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757
|||||| || ||||| | ||||| || ||| || || | ||||| || || | |
Sbjct 994548 TCCACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGA 994607
Query 127758 AGAGTTCCTTCTTTTCTGATG-GATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 127816
|||| | || | | || | || |||| ||| | || ||||| || || ||
Sbjct 994608 AGAGGTAGTTGCGCT-GGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTC 994666
Query 127817 TCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTAT 127875
||| ||||| | | ||| || | ||| | ||||||| | || || ||| ||
Sbjct 994667 TCGGAGTGGATGTTCTCCATCAT-GATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGAT 994725
Query 127876 CTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 127935
||| ||||| || ||| | | ||||| ||||| || ||||| ||||
Sbjct 994726 CTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGC 994785
Query 127936 AAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCA 127992
||| || |||||||| | ||||| | || || | ||||||| || | |||||
Sbjct 994786 AAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCA 994845
Query 127993 GTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034
||||| |||||||| || ||||| | ||| || || |||||
Sbjct 994846 GTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 994887
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613506195381960
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