Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq66 237 2e-57 seq35 138 1e-27 >seq66 Length=2244893 Score = 237 bits (262), Expect = 2e-57 Identities = 1167/1832 (64%), Gaps = 43/1832 (2%) Strand=Plus/Plus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 ||||||| || ||| ||| |||| | || ||||||||||| || |||||||| | Sbjct 1019836 TGAACTGGATAGGTGCAGCCGCAGCCTGGGTACGCAGGTAGTACATGCCAGTCTTGAGAC 1019895 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 | |||||||| || | ||||| || | |||| | ||| ||| | |||| Sbjct 1019896 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGT 1019955 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 || ||||| ||||| ||||| ||||| || || || || | ||| | | | Sbjct 1019956 GGATGTTCAAGGACTGGGACTGATCAATGAAAGCACCACGGTCGGCTGACATCTGGACGA 1020015 Query 115706 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 115765 | | ||| ||||| ||||| |||| ||| ||| || || | || || | Sbjct 1020016 TGTGGCGCTGAGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGAATGT 1020075 Query 115766 CCACGATATTTTGGATAGAGCCAC---CTGCCTTGACCATGAGATCCTTCATATCCTTTG 115822 || || |||||||| || | || ||| || | | ||||||| | | | Sbjct 1020076 TGGGAATGTTCTGGATAGAACCGTTCTCAGCAATGA---TGCGGTTCTTCATAGCATCGG 1020132 Query 115823 ACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAACAAAC 115878 ||||||| ||| | | ||||||| | | ||| | |||||||| ||| Sbjct 1020133 ACCAGAGGCCAGTATCGACAAGATCCTTGAGAAGCCAGGGG----TTGACAACCTGGAAC 1020188 Query 115879 TCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTG 115938 || || || ||| |||| | | |||||||||| ||||| ||||| ||||| |||||| Sbjct 1020189 TCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTG 1020248 Query 115939 TTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGG 115998 || |||| ||| |||| ||| ||| ||||||||||| || | ||| | |||||||| Sbjct 1020249 TTGCCCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGA 1020308 Query 115999 AGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGT--CGTAGTTGAGCTTTGTCT 116056 | ||| | || |||| | |||||||| | |||||| | | || | || | | || Sbjct 1020309 ATACCGTGCTCCTTAATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAG--TGGGCT 1020366 Query 116057 CCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCT 116116 | ||||||| ||||||||||| || |||| || || || ||||||| |||| || Sbjct 1020367 TGACATCCCACAAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACT 1020426 Query 116117 CATATGGGCCCTCAACCTCCGCCA-ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATT 116175 |||| || ||||| | || || | | | || | ||||||||||| ||||| || || Sbjct 1020427 CATAAGGACCCTCGATCTTGGCAATCTCCATAGAT-GCCTCGAGGGCAGCGTGGTAGATG 1020485 Query 116176 GTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCAC 116235 |||||||| || | |||| | || ||| || || || | |||| ||| Sbjct 1020486 GTCTCAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTGATTCGAAAGGAAGAC-GCAG 1020544 Query 116236 A-AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 116294 | | || | || || ||||| || ||||| | ||||| || || || | | || Sbjct 1020545 AGCGAGGAAAGCGTCAGCAAGACCCTGAACACCAACACCAATGGGTCGGTGGCGGCTGTT 1020604 Query 116295 AGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 116354 | || ||||| || ||||| || | ||| |||||| | | || || || Sbjct 1020605 ACTGTTGCGAGCCTCCTGAACGGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACG 1020664 Query 116355 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT 116414 | || ||||| || | || |||||||| | | ||| | | || | | | Sbjct 1020665 GACAACCACCTTGGTAACATCGTGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTATAGTC 1020724 Query 116415 GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 116474 |||| | ||| || || | || |||| || || |||| | ||| || ||| Sbjct 1020725 GACAAAGGCAGGGAGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGA 1020784 Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 |||||| | || || || || | || || || ||||| |||| |||||| || || Sbjct 1020785 GTACTCAACGATCTCAGTGCAGAGGTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTT 1020844 Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 ||| ||| || ||||||||||| |||||| | || | || ||||| || |||| Sbjct 1020845 GCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGC 1020904 Query 116595 CTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAG--TGGCGTTGGCTCGCCCCTC 116651 || || || | | ||| | | || | ||| | | || | ||| || | ||||| Sbjct 1020905 CTCTAGGATGGAGTACCACAGCTTCTG-AGCTCGGATAGTCTTGCG-ACCCTTG-CCCTC 1020961 Query 116652 CTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTG 116710 || ||||||||| || || ||||| || ||||| ||| ||| || | || || | Sbjct 1020962 CTTCTCGTACTTCTCATACAGAGCCTCGAATTCTTC-GCCATAGCAGTCAGCAAGGCCAG 1021020 Query 116711 GTGCCTT-ATCTGGACAGAAGAGAGACCATTGACCA--CCCTCCTCAACCCGCTTCATGA 116767 | || || | || || | | || ||| | ||| || |||||| |||||||||| Sbjct 1021021 G-GCATTCGTTGGGGCACATCAAAGTCCA--GTCCAAGTTCTTCTCAACACGCTTCATGA 1021077 Query 116768 AGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCT 116827 | || || ||||||||||| || ||| || || || || | ||||| | || | Sbjct 1021078 ACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGT 1021137 Query 116828 GATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCG 116887 | || || | || | || || | || ||| |||||||| || || ||||| | | Sbjct 1021138 GGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGG 1021197 Query 116888 CGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATA 116944 | | | || ||| ||| |||||| || || || || || ||| || | Sbjct 1021198 CAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGA 1021257 Query 116945 CGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGT 117004 | |||||||| || |||||||| | || || || || || ||| ||| Sbjct 1021258 CTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCG 1021317 Query 117005 TGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGC 117064 | || | || | ||||| || || || ||||| || ||| ||| || || || | Sbjct 1021318 TAGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCAC 1021377 Query 117065 ACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC 117124 | | | ||| || ||||||| || || || ||| |||| | | | ||||||| Sbjct 1021378 ATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGC 1021437 Query 117125 AGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGA 117184 | |||| || | ||| |||||||||||||||||||| || | || ||| | | Sbjct 1021438 ATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAA 1021497 Query 117185 ACA--TACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTG 117242 | | | || |||||| | ||| ||||| | |||| ||||| || || Sbjct 1021498 AGAATTTGCT--GGACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCA 1021555 Query 117243 AATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAG 117302 || || | | || ||||||| ||||| || ||| || | | | ||||| || Sbjct 1021556 AACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAG 1021615 Query 117303 CCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 117334 | || |||| || | ||||| ||||||| Sbjct 1021616 CTTCAGGAGATATGACCGCTCCAGTGTCTTGA 1021647 >seq35 Length=1329723 Score = 138 bits (152), Expect = 1e-27 Identities = 349/522 (67%), Gaps = 9/522 (2%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| || ||||||||||| |||||||| || || |||||| ||| || Sbjct 994369 AGCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCC 994428 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| | |||||| | |||||| || | ||| | || ||||||||| Sbjct 994429 AGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGAT 994488 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAA 127697 ||||| || || || |||| || |||| |||||||| | | | |||| | | Sbjct 994489 ACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGA-AGAGTCCTTGTCCTGGA 994547 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 |||||| || ||||| | ||||| || ||| || || | ||||| || || | | Sbjct 994548 TCCACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGA 994607 Query 127758 AGAGTTCCTTCTTTTCTGATG-GATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 127816 |||| | || | | || | || |||| ||| | || ||||| || || || Sbjct 994608 AGAGGTAGTTGCGCT-GGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTC 994666 Query 127817 TCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTAT 127875 ||| ||||| | | ||| || | ||| | ||||||| | || || ||| || Sbjct 994667 TCGGAGTGGATGTTCTCCATCAT-GATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGAT 994725 Query 127876 CTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 127935 ||| ||||| || ||| | | ||||| ||||| || ||||| |||| Sbjct 994726 CTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGC 994785 Query 127936 AAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCA 127992 ||| || |||||||| | ||||| | || || | ||||||| || | ||||| Sbjct 994786 AAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCA 994845 Query 127993 GTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||||| |||||||| || ||||| | ||| || || ||||| Sbjct 994846 GTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 994887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506195381960