Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq35 226 5e-54 >seq35 Length=1329723 Score = 226 bits (250), Expect = 5e-54 Identities = 390/564 (69%), Gaps = 2/564 (0%) Strand=Plus/Plus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 || ||||| ||||||||| |||||| |||||||| |||||||||| ||||||||| | | Sbjct 994361 AGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAG 994420 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA 160036 | ||||| ||||||| || | | |||||||| || |||| ||||| || ||||| Sbjct 994421 GTCAGGCCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTG 994480 Query 160037 AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTG 160096 || ||||| ||||| ||||| ||||| || || || | || | |||| || | || || Sbjct 994481 AAGAAGATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTTG 994540 Query 160097 TCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACG 160156 || ||| ||||| | ||||||| ||||||||||| |||||| || ||| ||| | | Sbjct 994541 TCCTGGATCCACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATG 994600 Query 160157 GCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAG 160216 ||||| || | || ||| | ||||||| || | || ||| ||| Sbjct 994601 GCGTTGAAGAGGTAGTTGCGCTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAG 994660 Query 160217 TACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCC 160276 || | || | ||| | || || || ||||| || |||||| || ||||| Sbjct 994661 TAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCG 994720 Query 160277 AGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCG 160336 | ||| ||||| |||| | | |||| || | || || | ||||||| | Sbjct 994721 GGGATCTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAG 994780 Query 160337 GCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTT 160396 || |||||||| |||| | |||||||||||| | ||||||| | ||| || | || Sbjct 994781 GCAGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTG 994840 Query 160397 TCCCAGT-GTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTG 160455 | ||||| ||| || || | || || ||||| |||||| ||| |||| || ||||| Sbjct 994841 TTCCAGTCGTG-CAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTC 994899 Query 160456 AGCAGTTTTGTACATGGCCCAGAT 160479 || |||||||||| |||||| Sbjct 994900 GGCCTTTTTGTACATTTGCCAGAT 994923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795153897933360