Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq35 293 2e-74
seq44 118 1e-21
seq42 104 2e-17
>seq35
Length=1329723
Score = 293 bits (324), Expect = 2e-74
Identities = 582/850 (68%), Gaps = 25/850 (3%)
Strand=Plus/Plus
Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663
|| || || ||||| || ||||| || || || || || || ||| ||| ||| |
Sbjct 994076 TTCTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTC 994135
Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACG 132720
||| || || |||||||||| | ||||| ||| | |||| | || |||||
Sbjct 994136 TCCATGAAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCGTTGCCAAG-AG--CGACG 994192
Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT---GGTTTCGCAATTAAGTCCC 132777
||||| | ||||| || ||||| ||||| ||| ||| ||| || || | |||
Sbjct 994193 AGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCG---TTCATGCCC 994249
Query 132778 AGCAGACGCACCGGC-AGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGT 132836
|||||| |||| || || || ||||| | || ||||||||| ||| || || ||
Sbjct 994250 AGCAGA-GCACAGGGGAGAGCCTCGGTCAAGAACTCTTGCTCGATTCTGACGGCATCAGT 994308
Query 132837 GACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCA 132896
|| |||||| | | | || ||| | || | | || || | | || |||
Sbjct 994309 GATGATTTCACGGATAATCTCCTTGCTGGCGCGGTTCTTCAGGTGAGAGTGGAGCAGGCA 994368
Query 132897 AGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCC 132956
|||||||||| |||| ||||||||| | || ||||| |||||| ||| |||| |||
Sbjct 994369 AGCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCC 994428
Query 132957 GGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGAC 133016
|||||||| || | || |||||||| || |||| ||| || || |||||||
Sbjct 994429 AGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGAT 994488
Query 133017 GCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG--CTGGCG 133074
||||||||||| || || || || ||||||| | || | | || ||| ||||
Sbjct 994489 ACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTGG-- 994546
Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTC 133134
||||| | ||||| || ||||| | || ||| || || || || ||||||||
Sbjct 994547 ATCCACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTG 994606
Query 133135 AACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACA 133192
|| | | |||| | || | | | ||||||||||||||||| || ||
Sbjct 994607 AAGAG--GTAGTTGCGCTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGG 994664
Query 133193 TTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCA 133252
| || ||||| | ||||||||| ||| || || ||||| ||||| || |||||| |
Sbjct 994665 TCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGA 994724
Query 133253 CCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGG 133312
||| || || ||||||||||||||| || |||||||| ||||||||| ||| |
Sbjct 994725 TCTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAG 994784
Query 133313 CGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCC 133369
| || |||||||| | ||| |||||| | ||||| ||||||| ||| | ||
Sbjct 994785 CAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCC 994844
Query 133370 AGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTT 133429
||||| || ||||||||||| || | ||| ||| ||||||| || || |||||||| |
Sbjct 994845 AGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCT 994904
Query 133430 TTTTGTACAT 133439
||||||||||
Sbjct 994905 TTTTGTACAT 994914
>seq44
Length=3047126
Score = 118 bits (130), Expect = 1e-21
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || |||||||| || || |||||| | || || ||| |
Sbjct 1396737 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 1396796
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|||||| | | | |||| | || || |||| ||||| ||||| |||||| | ||
Sbjct 1396797 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 1396855
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||||| | || | || || || ||||| || || | |||||||| | ||||||
Sbjct 1396856 CCAGCAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 1396915
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||||||| ||||| | || || || |||| |||||
Sbjct 1396916 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCG 1396954
Score = 114 bits (126), Expect = 1e-20
Identities = 167/231 (72%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || | || ||||| || ||||| | || || ||| | |
Sbjct 758261 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACAATCACACTGGAAGTGGAGTCATCT 758202
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || ||| || | ||||| ||||| || ||| | |||||
Sbjct 758201 GATACCATCGACAACG-TCAAGTCAAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCA 758143
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | ||| || || |||||||| |||| |||||||| | |||||||||
Sbjct 758142 GCAGCGCCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAA 758083
Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
|||||| ||||| ||| || ||||| ||||| || || || | || ||||
Sbjct 758082 CATCCAGAAGGAGAGC-ACCCTGCACTTGGTCCTCCGCCTGCGTGGTGGCC 758033
Score = 111 bits (122), Expect = 2e-19
Identities = 137/185 (74%), Gaps = 2/185 (1%)
Strand=Plus/Minus
Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310
|| |||| || || ||||| ||||| ||||||||| |||| || ||| | |||| | |
Sbjct 758482 TAGTCGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCCGATACCA 758423
Query 38311 TGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369
| | |||| | || || |||| ||||| ||||| || || ||||||| |||||
Sbjct 758422 TTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGT 758364
Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429
||||| | || || || ||||| || |||| |||||||| | ||| |||||||||||
Sbjct 758363 CTCATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTGAGCGATTACAACATCCAG 758304
Query 38430 AAGGA 38434
|||||
Sbjct 758303 AAGGA 758299
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| ||||| ||||||||| |||| || ||| | ||
Sbjct 758769 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 758710
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | || || |||| ||||| ||||| ||||| | |||||
Sbjct 758709 GACACTATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 758650
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| ||||| || || || || | || || || ||||||||||
Sbjct 758649 CAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 758590
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || || || |||| || ||
Sbjct 758589 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCG 758555
>seq42
Length=797865
Score = 104 bits (114), Expect = 2e-17
Identities = 149/208 (72%), Gaps = 3/208 (1%)
Strand=Plus/Minus
Query 38239 AAAAAATGCAAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 38296
|| |||||| || | ||||| || || || |||||||| ||||||||| | || |||||
Sbjct 706199 AACAAATGCGAAAAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGA 706140
Query 38297 GGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356
| || |||||| | | | | || || |||| ||||| |||||||| ||| |
Sbjct 706139 GTCCTCCGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCC 706080
Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416
|| || ||||| | || | ||| ||||| ||||| || || | || ||||| ||
Sbjct 706079 GGATCAGCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTGTCTGA 706020
Query 38417 CTACAACATCCAAAAGGAAGCGACGCTG 38444
|||||||||||| |||| ||| |||||
Sbjct 706019 CTACAACATCCAGAAGG-TGCGTCGCTG 705993
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500171980967040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |