Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq2 223 4e-53
seq66 84.2 3e-11
>seq2
Length=1230088
Score = 223 bits (246), Expect = 4e-53
Identities = 464/689 (67%), Gaps = 8/689 (1%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|||||||| |||||||||||||| || || || || || | ||||| || ||||||||
Sbjct 960339 TCGAAATCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCC 960280
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| |||||| | | | || ||||| || |||||||| || || || || ||||| |||
Sbjct 960279 TCCTCAATGGTCAGGAGAGAGACATCGAAAGTACCACCGCCAAGATCGAAGATGAGGACG 960220
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| ||| | || ||||| || |||||||| || || || || || || || ||
Sbjct 960219 TTGCGCTCGCCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCAGCAGCGGTGGGCTCG 960160
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| || ||||| || ||| || || ||||| | || || || || || || ||
Sbjct 960159 TTGATGATACGCAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTGGTGGCCTGACGC 960100
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| ||||| |||||||| ||||| || ||||| |||| |||| | | || ||
Sbjct 960099 TGGCTGTCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTTGTTGACGGTGGTGCCCAGG 960040
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| | || ||| | || ||| ||||| || | ||| || || ||||| || | |
Sbjct 960039 TAGGCCTCGGCGGTCTCACGCATCTTGGTCAGGATCATGGAGGAGATCTCCTCGGGAGTG 959980
Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC-CGGG 7875
|| | || || || || || || || || || | | ||| || | ||| | |
Sbjct 959979 AAGTTCTTGGTCTCGCCCTTGAACTCGACCTCGACGACGGGCTT----GGAGCCCTTGTC 959924
Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935
|| || ||| | | | | ||||| || | || |||| | || | ||||| |
Sbjct 959923 GACAATCTTGAAGGGGAAGTGCTTCATGTCAGCCTGAACCTCGGGATCGGCGAACTTGCG 959864
Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995
|| || | ||||| || || || || ||||| | |||||||||||| ||||||||
Sbjct 959863 ACCAATCAATCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTT 959804
Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055
|| || || || || ||||| || | || || || || ||| |||| ||||||||
Sbjct 959803 GGCGGCATCACCAATCAGACGCTC---GGTGTCGGTGAAGGCAACGAACGAAGGGGTCGT 959747
Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115
||| || || |||||||| ||||| || || ||||| | | ||| ||||||||
Sbjct 959746 TCGGTTACCCTGGTCGTTGGCAATGATATCACATCGGTCCTCACGGAAGATACCGACGCA 959687
Query 8116 CGAATACGTTGTTCCTAAATCAATACCGA 8144
|| ||||| || || | || |||||||
Sbjct 959686 AGAGTACGTAGTACCCAGGTCGATACCGA 959658
>seq66
Length=2244893
Score = 84.2 bits (92), Expect = 3e-11
Identities = 361/569 (63%), Gaps = 9/569 (2%)
Strand=Plus/Plus
Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTC 105618
||||| || |||||||||| ||| || ||||| | || || ||||| || |
Sbjct 1021062 TCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGG 1021121
Query 105619 GCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCAT 105678
||||||| | || || ||| || | || || || || | | ||||||||||||
Sbjct 1021122 ACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAA 1021181
Query 105679 GGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATAT 105732
|| || | |||| |||| || | | | | ||| || | || | ||| |||
Sbjct 1021182 GGCTCGAGGTAGATGGCAA-AGGCAC--CAGGGCGCTTGTTGCCACCCTGGTCGACGTAT 1021238
Query 105733 CTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTT 105792
|| || || ||| | ||||| | ||| || || ||||| | ||| || || || ||
Sbjct 1021239 CTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTG 1021298
Query 105793 CCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCC 105852
|| ||| | || | ||||| | | ||| |||| | || ||||| ||||||
Sbjct 1021299 CCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCC 1021358
Query 105853 CACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCC 105912
||| || ||||| |||| || ||||| ||||| || || || || |||
Sbjct 1021359 ATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCC 1021418
Query 105913 TTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGA 105972
|| | | | |||||| || || |||| || | | || |||||||| ||||| ||
Sbjct 1021419 TTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGAGG 1021478
Query 105973 GTTGGTGTTGCATGAATGAACAAACCTTTCGATAACGCTTCGTATGTTTCCAGGACGTGA 106032
|| || | ||||| | || || | || | | |||||| || ||||| |
Sbjct 1021479 GTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGC 1021538
Query 106033 TCAATATCGTGTCCATGAATACCAATAGCGACGCGCATATAGAGATATTGGGGTGTTTCA 106092
||||| | || ||| || |||| ||| || |||||| | | || ||| |||
Sbjct 1021539 TCAATGTTGTCTCCCCAAACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCA 1021598
Query 106093 ATAATTTCACCGTCAATTTTCTGGAGATA 106121
| ||| | || |||| ||| |||||||
Sbjct 1021599 ACAATCTTGCCATCAAGCTTCAGGAGATA 1021627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635131759970040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |