Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2 223 4e-53 seq66 84.2 3e-11 >seq2 Length=1230088 Score = 223 bits (246), Expect = 4e-53 Identities = 464/689 (67%), Gaps = 8/689 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||||||| || || || || || | ||||| || |||||||| Sbjct 960339 TCGAAATCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCC 960280 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | || ||||| || |||||||| || || || || ||||| ||| Sbjct 960279 TCCTCAATGGTCAGGAGAGAGACATCGAAAGTACCACCGCCAAGATCGAAGATGAGGACG 960220 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || ||||| || |||||||| || || || || || || || || Sbjct 960219 TTGCGCTCGCCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCAGCAGCGGTGGGCTCG 960160 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| || || ||||| | || || || || || || || Sbjct 960159 TTGATGATACGCAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTGGTGGCCTGACGC 960100 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| ||||| || ||||| |||| |||| | | || || Sbjct 960099 TGGCTGTCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTTGTTGACGGTGGTGCCCAGG 960040 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||| | || ||| ||||| || | ||| || || ||||| || | | Sbjct 960039 TAGGCCTCGGCGGTCTCACGCATCTTGGTCAGGATCATGGAGGAGATCTCCTCGGGAGTG 959980 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC-CGGG 7875 || | || || || || || || || || || | | ||| || | ||| | | Sbjct 959979 AAGTTCTTGGTCTCGCCCTTGAACTCGACCTCGACGACGGGCTT----GGAGCCCTTGTC 959924 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 || || ||| | | | | ||||| || | || |||| | || | ||||| | Sbjct 959923 GACAATCTTGAAGGGGAAGTGCTTCATGTCAGCCTGAACCTCGGGATCGGCGAACTTGCG 959864 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 || || | ||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 959863 ACCAATCAATCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTT 959804 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 || || || || || ||||| || | || || || || ||| |||| |||||||| Sbjct 959803 GGCGGCATCACCAATCAGACGCTC---GGTGTCGGTGAAGGCAACGAACGAAGGGGTCGT 959747 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 ||| || || |||||||| ||||| || || ||||| | | ||| |||||||| Sbjct 959746 TCGGTTACCCTGGTCGTTGGCAATGATATCACATCGGTCCTCACGGAAGATACCGACGCA 959687 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGA 8144 || ||||| || || | || ||||||| Sbjct 959686 AGAGTACGTAGTACCCAGGTCGATACCGA 959658 >seq66 Length=2244893 Score = 84.2 bits (92), Expect = 3e-11 Identities = 361/569 (63%), Gaps = 9/569 (2%) Strand=Plus/Plus Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTC 105618 ||||| || |||||||||| ||| || ||||| | || || ||||| || | Sbjct 1021062 TCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGG 1021121 Query 105619 GCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCAT 105678 ||||||| | || || ||| || | || || || || | | |||||||||||| Sbjct 1021122 ACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAA 1021181 Query 105679 GGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATAT 105732 || || | |||| |||| || | | | | ||| || | || | ||| ||| Sbjct 1021182 GGCTCGAGGTAGATGGCAA-AGGCAC--CAGGGCGCTTGTTGCCACCCTGGTCGACGTAT 1021238 Query 105733 CTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTT 105792 || || || ||| | ||||| | ||| || || ||||| | ||| || || || || Sbjct 1021239 CTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTG 1021298 Query 105793 CCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCC 105852 || ||| | || | ||||| | | ||| |||| | || ||||| |||||| Sbjct 1021299 CCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCC 1021358 Query 105853 CACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCC 105912 ||| || ||||| |||| || ||||| ||||| || || || || ||| Sbjct 1021359 ATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCC 1021418 Query 105913 TTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGA 105972 || | | | |||||| || || |||| || | | || |||||||| ||||| || Sbjct 1021419 TTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGAGG 1021478 Query 105973 GTTGGTGTTGCATGAATGAACAAACCTTTCGATAACGCTTCGTATGTTTCCAGGACGTGA 106032 || || | ||||| | || || | || | | |||||| || ||||| | Sbjct 1021479 GTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGC 1021538 Query 106033 TCAATATCGTGTCCATGAATACCAATAGCGACGCGCATATAGAGATATTGGGGTGTTTCA 106092 ||||| | || ||| || |||| ||| || |||||| | | || ||| ||| Sbjct 1021539 TCAATGTTGTCTCCCCAAACGCCAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCA 1021598 Query 106093 ATAATTTCACCGTCAATTTTCTGGAGATA 106121 | ||| | || |||| ||| ||||||| Sbjct 1021599 ACAATCTTGCCATCAAGCTTCAGGAGATA 1021627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131759970040