Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq66 286 4e-72 seq35 149 8e-31 seq43 120 4e-22 seq1 91.5 2e-13 >seq66 Length=2244893 Score = 286 bits (316), Expect = 4e-72 Identities = 973/1494 (65%), Gaps = 29/1494 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| ||||| | ||||| || || | || | || || | ||||| ||| Sbjct 1021591 CCACAGCACATGATTATGCGTGTGGCTGTTGGCGTTTGGGGAGACAACATTGAGCGTGTC 1021532 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||||||| || |||||| | | || | ||| || | || ||||||||| Sbjct 1021531 CTTGAGACATACCACCTCATGTCCAGCAAATTCTTTACCCATGCCTCTCCCACCCTCTTC 1021472 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||||||||| ||| | | || ||||| || ||||| | | | ||||| || Sbjct 1021471 AACGCTGGTACCCCACAAGCTCAGCTGTCCTCATGCTTCCTGGTGGACATGAAGGACGAC 1021412 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || | || || |||| |||||| | ||||||| || || ||| ||||||| Sbjct 1021411 AGCATTGAGGGTATCTACGACACTCTAAAGACATGTGCCATGATTTCCAAGATGGCTGGT 1021352 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 |||||||| || || |||| | || | || | ||| ||| || || || Sbjct 1021351 GGTATCGGCCTGAACGTCCACCGTATCCGTGCTACGGGCTCTTACATTGCCGGCACCAAC 1021292 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 ||| || | ||||| || || |||||||| || || ||| ||| || | || || Sbjct 1021291 GGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACGTC 1021232 Query 111972 AACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 112028 |||| | ||| ||| || | | || |||| || ||||| |||||||| Sbjct 1021231 GACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCTTGGCACGCC 1021172 Query 112029 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGC 112088 ||| || | ||||||||||| | || ||||| || | || |||| || ||| Sbjct 1021171 GATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGTGCCCGT 1021112 Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG--TG 112146 || || ||| |||||||||||| || ||||| ||||||||| | |||||| ||| || Sbjct 1021111 GACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAGAAGAACTTG 1021052 Query 112147 GCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGA 112204 | | ||| || | | || || || || || || || || | || ||| ||| || Sbjct 1021051 G--ACTGGACTTTGATGTGCCCCAACGAATGC-CCTGGCCTTGCTGACTGCTATGGC-GA 1020996 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTG 112262 || || || || || || ||||||||| ||| | | | | | | || ||| | Sbjct 1020995 AGAATTCGAGGCTCTGTATGAGAAGTACGAG-AAGGAGGGCAAGGGTC-GCAAGACTATC 1020938 Query 112263 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321 | |||| | || | ||||| | | || || || | || || |||||||||| || | Sbjct 1020937 CGAGCT-CAGAAGCTGTGGTACTCCATCCTAGAGGCCCAGACTGAGACTGGTAACCCCTT 1020879 Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381 |||||||||||| || ||||| |||| ||||| || || ||||| |||| ||| Sbjct 1020878 TATGCTTTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCATCCG 1020819 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441 || ||||||||||| || || ||| | || | | | | || ||| ||||| || Sbjct 1020818 AAGCTCCAACCTCTGCACTGAGATCGTTGAGTACTCTGCCCCTGACGAGGTCGCTGTCTG 1020759 Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA--TTTGAT 112499 ||| | || || | |||||||| | ||| || | | | || ||| | | ||| Sbjct 1020758 CAACTTGGCCTCTTTGGCTCTCCCTGCCTTTGTCGA-CTATA-ACGAAGGCTGCTATGAC 1020701 Query 112500 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559 | | | || || ||||| ||||| || || ||||| ||| | | || ||| Sbjct 1020700 TTTAAGAAGCTTCACGATGTTACCAAGGTGGTTGTCCGTAACCTCAACCGCATCATCGAT 1020641 Query 112560 AGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 112619 || | ||||||||| || ||||| || ||| | | ||||| || |||||| Sbjct 1020640 GTGAACTACTACCCCGTTCAGGAGGCTCGCAACAGTAACAGCCGCCACCGACCCATTGGT 1020581 Query 112620 CTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTCCGA 112678 | ||||| || ||||| || || | ||| | || || || | | || || || Sbjct 1020580 GTTGGTGTTCAGGGTCTTGCTGACGCTTTCCTCGCTCTG-CGTCTTCCTTTCGAATCACC 1020522 Query 112679 CGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGC 112738 |||||| || | || || || |||||||| || || ||||| || || ||||| Sbjct 1020521 CGAAGCTCGCGAGTTGAACAAGCAAATCTTTGAGACCATCTACCACGCTGCCCTCGAGGC 1020462 Query 112739 GAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 112798 | |||| | || || | || ||||| ||||| | || |||| || || || || Sbjct 1020461 ATCTATGGAGATTGCCAAGATCGAGGGTCCTTATGAGTCATTCAAGGGATCACCCGCCTC 1020402 Query 112799 ACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGA 112858 |||| | || || ||||| ||||||| | || ||| | | || ||||| Sbjct 1020401 TGAAGGCATTCTCCAGTTTGACTTGTGGGATGTCAAGCCCACTGACCTGTGGGAGTGGGA 1020342 Query 112859 CGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAAT 112918 | | |||||||| | || |||||| | ||| |||| |||||| | | | || || || Sbjct 1020341 CTCGCTCAAGGAGCAGATTAAGGAGCACGGTATTCGCAACAGTTTGCTCGTCGCCCCCAT 1020282 Query 112919 GCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGAC 112978 ||| || ||| ||| | || ||| |||| || ||||||||||| || |||||||| | Sbjct 1020281 GCCCACTGCCAGCACTTCCCAGATCCTGGGCAACAATGAATGCTTCGAGCCCTACACCTC 1020222 Query 112979 GAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA---CAAGCATCT 113035 |||||||| | | || | ||| || || ||||| | ||||||| | || ||| Sbjct 1020221 CAACATCTACCAGCGACGTGTCCTTGCTGGCGAGTTCCAGGTTGTCAACCCCTGGCTTCT 1020162 Query 113036 CGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 113089 | |||| || || | ||| ||||||||| | | ||||||| | | ||| Sbjct 1020161 CAAGGAT---CTTGTCGATACTGGCCTCTGGTCCGATGCTATGAAGAACCGCAT 1020111 >seq35 Length=1329723 Score = 149 bits (164), Expect = 8e-31 Identities = 353/523 (67%), Gaps = 13/523 (2%) Strand=Plus/Minus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 101873 ||||| || |||||| | ||||| || |||||| || |||| ||||| | | | || Sbjct 994887 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 994828 Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933 || | || ||| | ||||| |||||||||| |||||||||| ||||| || ||| Sbjct 994827 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATT 994768 Query 101934 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 101992 || ||||| | | || | ||||| || |||| | || || ||| Sbjct 994767 GTCAACGAGAACCTGGTCGAGCGTTTCAGCGGCGAGGTTCAGATCCCC-GAGGCTCGATG 994709 Query 101993 TTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 102051 ||||| | || || | |||| ||| | | | || ||||| ||| |||| Sbjct 994708 CTTCTACG-GTTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 994650 Query 102052 TAGACAAGTATATTAAGGATGGTGCTG--AGAAGAAGCAGCTCTTTGAAGCCATCCAAAC 102109 | |||| || | ||||| | | | || || | ||||| | ||||| | || Sbjct 994649 TCGACACCTACGTCAAGGA--GCACAGCCAGCGCAACTACCTCTTCAACGCCATTGAGAC 994592 Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168 |||| || || | ||||| || || ||||| || |||||| | | |||| | | | Sbjct 994591 CATTCCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGACTC 994532 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 |||||||||| |||| || | || ||||| || ||||||||||||||| || Sbjct 994531 -TTCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAG 994473 Query 102229 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288 |||| | | || | |||||||||||| ||||||||||||| || || |||||||| Sbjct 994472 CCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCA 994413 Query 102289 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||| ||||||||||||||||| || ||| || ||||| Sbjct 994412 ACGAGCTCATCTCTCGTGACGAGGGCCTGCACACCGACTTTGC 994370 >seq43 Length=1687706 Score = 120 bits (132), Expect = 4e-22 Identities = 281/415 (68%), Gaps = 22/415 (5%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || || | ||||| | ||| | || |||| | ||||| || |||| Sbjct 759617 TCAAAGCGGCCGGGACGCATCAGCGCCTTATCCAAGACATCAGCACGATTGGTACCGGCC 759558 Query 15948 ATGACAACAATACCTGTT-TCGT-TATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005 | |||||| | |||||| ||| | | || || ||||| ||||| | || |||||||| Sbjct 759557 AAGACAACGA--CCTGTTCTCGAGTGTTGAATCCGTCCATTTCTGTAAGAATCTGGTTAA 759500 Query 16006 TAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCC--C 16061 || || ||||||||||| ||| | || ||| || || || || || | Sbjct 759499 GGGTAGCCTCGCGTTCATCATTTCCGCCGA-AT----CCACGACCGCTTTCCTGTCGAGC 759445 Query 16062 ACGGC-------ATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 16114 ||||| ||| || || |||||||||| |||||| || || | || | | Sbjct 759444 ACGGCCGATGGCATCGATTTCGTCAATGAAGATGATGCAAGGCGCGTTCTTTCGGCCTTC 759385 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 |||| || || ||||| || | ||||| |||||||||||||||||||| | | Sbjct 759384 GGCAAACAGGTCTCGTACTCGAGAAGGACCCACGCCAACAAACATCTCCACAAACTCAGA 759325 Query 16175 GGCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 || || | | ||| ||||| ||| || || ||| | || ||||||||||| Sbjct 759324 ACCGCTTACGCT-AAAGAAAGGGACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAG 759266 Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 |||| || || || || ||| | ||| | ||| ||||| ||||||||||| || Sbjct 759265 TCTTTCCTGTTCCCGGGGGACCAGAGAGAATGGCGCCTCGAGGAATCTTGGCACC 759211 >seq1 Length=3480556 Score = 91.5 bits (100), Expect = 2e-13 Identities = 199/296 (67%), Gaps = 8/296 (3%) Strand=Plus/Plus Query 176036 AGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAG 176095 || || | |||||| | ||| | ||||| || | |||||||||||||| |||| || Sbjct 2613713 AGTCGAGAACCAAAGTTACCGCTGGGCTCGAGGACGTTGATATTGTTTGAGCCCACAAAG 2613772 Query 176096 TCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTC 176155 || | ||||| |||||||| | | || |||| || ||||||||||| ||| || Sbjct 2613773 TCTTGGGCCAATCCAACAATCGTCTGCTGCAGCGAGATGTCGCCGTGGTGGTAAGCAGTC 2613832 Query 176156 TTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCCTTGA----GATTCTT 176211 | | ||| | | |||| || | | |||| | |||||||||| | ||| | Sbjct 2613833 AGTCCAGAGACGTAACCAGCCAGCTCCACAACTT---TTTCATCCTTGACCACGTTTC-T 2613888 Query 176212 GTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCCGCCATGTGTGC 176271 | |||||| ||||||| ||||| ||||| |||||| || ||||| ||| | Sbjct 2613889 CTTGAAACAGGCGTACAGCACCTTTCGTTGACCAGGCTTCAGTCCATCAATCATTGACGG 2613948 Query 176272 GATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTCCTTGTGTACAAAGT 176327 || || | | ||||||| |||||| | ||| ||||||| ||||||| Sbjct 2613949 AATGGATCTTATGTTATCCGCCATACTGAACAGAATGAGCTCCTTGTTCACAAAGT 2614004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741383534320