Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq66 232 8e-56
seq35 95.1 1e-14
>seq66
Length=2244893
Score = 232 bits (256), Expect = 8e-56
Identities = 1026/1601 (64%), Gaps = 55/1601 (3%)
Strand=Plus/Plus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559
||||| ||||| |||||||| ||||| |||||| || || | ||| | || |||
Sbjct 1019960 GTTCAAGGACTGGGACTGATCAATGAAAGCACCACGGTCGGCTGACATCTGGACGATGTG 1020019
Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619
|| || ||||| ||||||||||||| |||||| || |||||||||
Sbjct 1020020 GCGCTGAGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGAATGTTGGG 1020079
Query 109620 GATGTTTTGAATAGAGCCAC---CAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCA 109676
||||| || ||||| || |||| | | || | | |||||| | | |||||
Sbjct 1020080 AATGTTCTGGATAGAACCGTTCTCAGCAATGA---TGCGGTTCTTCATAGCATCGGACCA 1020136
Query 109677 GAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGC 109736
||| || | ||||| | | ||| |||||| || || || |||||
Sbjct 1020137 GAGGCCAGTATCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGC 1020196
Query 109737 AAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAG 109796
||| ||||| |||||||||| | |||||||| ||||| || ||||||||||| ||
Sbjct 1020197 AAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGCCCAG 1020256
Query 109797 GATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTT 109856
||| || | |||| || ||||||||||| || | ||| | |||||| || | ||| |
Sbjct 1020257 GATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATACCGTG 1020316
Query 109857 CGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGT---CTC 109913
| ||| | | |||| | | |||||| || |||| | | ||| ||
Sbjct 1020317 CTCCTTAATCTGCTCCTTGAGCGAGTCCCACTC-------CCAC--AGGTCAGTGGGCTT 1020367
Query 109914 ACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTC 109973
||||||||| || || || | || |||| || || || |||||||| |||
Sbjct 1020368 GACATCCCACAAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTC 1020427
Query 109974 GTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGT 110033
|| | ||||| | || ||| | ||| || ||||| || || || || || || ||
Sbjct 1020428 ATAAGGACCCTCGATCTTGGCAATCTCCATAGATGCCTCGAGGGCAGCGTGGTAGATGGT 1020487
Query 110034 CTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGAC-CACAAA 110092
|||||| || || |||| ||||| || | ||||| ||||||| || |
Sbjct 1020488 CTCAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTGATTCGAAAGGAAGACGCAGAGC 1020547
Query 110093 GAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAG 110152
|| ||| | || || |||||||||||||| | ||||||||| || || |||||
Sbjct 1020548 GAGGAAA-GCGTCAGCAAGACCCTGAACACCAACACCAATGGGTCGGTGGCGGCTGTTAC 1020606
Query 110153 AGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCG 110212
| ||||| | |||||||| |||| ||||||| || ||||| ||
Sbjct 1020607 TGTTGCGAGCCTCCTGAACGGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGA 1020666
Query 110213 TCACAGTCTTCGTGATTTCATGGAGTTTGT---CGTAATCGAACGTTTTCGTCTCCTTAT 110269
|| ||| || | || || || || | || || | | | |||| | | |
Sbjct 1020667 CAACCACCTTGGTAACATCGTGAAGCTTCTTAAAGTCATAGCA-GCCTTCG--TTATAGT 1020723
Query 110270 TGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG 110329
|||| | |||||||| | ||| || | ||||| |||| |||||| | | |
Sbjct 1020724 CGACAAAGGCAGGGAGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAG 1020783
Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389
||| || | || || || || | |||||| || ||| |||| ||||||||| |
Sbjct 1020784 AGTACTCAACGATCTCAGTGCAGAGGTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGT 1020843
Query 110390 TCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTG 110449
| ||| |||||| |||||||| || ||||| | ||| ||||||| || ||||| |
Sbjct 1020844 TGCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGG 1020903
Query 110450 ACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAG--TTGCGTTAGCGAGACCTT 110506
|| || |||| | ||| | | || | || ||| || ||||| | | || |
Sbjct 1020904 CCTCTAGGATGGAGTACCACAGCTTCTG-AGCTCGGATAGTCTTGCG--ACCCTTGCCCT 1020960
Query 110507 CCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCT 110566
||| ||||||||| |||| |||| ||||| | || || |||| ||| ||
Sbjct 1020961 CCTTCTCGTACTTCTCATACAGAGCCTCGAATTCTTCGCCATAGCAGTCAGCAAG-GCCA 1021019
Query 110567 TCGCCTT-GTCGGGACAGAAGAGGGACCAATTTCCA--CCCTCCTCAACCCTCTTCATGA 110623
|| || || ||| || | | | ||| |||| || |||||| | ||||||||
Sbjct 1021020 GGGCATTCGTTGGGGCACATCAAAGTCCA--GTCCAAGTTCTTCTCAACACGCTTCATGA 1021077
Query 110624 ACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTT 110683
|||| ||||| ||||| | || ||| ||||||||| ||| ||||||| | || |
Sbjct 1021078 ACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGT 1021137
Query 110684 GGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAG 110743
|||| ||| || || | || || | || ||| | |||||| || ||||| |||| |
Sbjct 1021138 GGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGG 1021197
Query 110744 CGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGA 110797
| | || || | | || || |||||| || || | || ||| ||||
Sbjct 1021198 CAAAGGCACC---AGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGA 1021254
Query 110798 AGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACT 110857
|||| | ||||| || || || || | ||| ||| || || || ||| ||
Sbjct 1021255 AGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGC 1021314
Query 110858 TATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTG 110917
| ||||| || ||||| | || || |||||||| ||| ||| ||| |
Sbjct 1021315 CCGTAGCACGGATACGGTGGACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGG 1021374
Query 110918 CACA-CTCTGT-GAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAG 110975
|||| ||| | |||||| | || ||||| ||||| || |||| || | | ||
Sbjct 1021375 CACATGTCTTTAGAGTGT--CGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAG 1021432
Query 110976 AAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATG 111035
||||| || |||| ||||| | || || || || |||||||| || || | |||||
Sbjct 1021433 GAAGCATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATG 1021492
Query 111036 AATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAG 111074
| | ||| ||| |||||| || |||||| || ||
Sbjct 1021493 --GGTAAAGAATTTGCTGGACATGAGGTGGTATGTCTCAAG 1021531
>seq35
Length=1329723
Score = 95.1 bits (104), Expect = 1e-14
Identities = 138/192 (72%), Gaps = 5/192 (3%)
Strand=Plus/Plus
Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567
|| || || || || |||||||||||||| || |||| || ||||||||||| |||
Sbjct 994382 TGCAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCT 994441
Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627
|| ||||| ||||| ||||||| ||| ||| |||||||| ||||| ||
Sbjct 994442 CTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATACCCTCGACGGCA 994501
Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GAACCACTTGAGAGC 119683
|| || || | || |||| ||| ||||| ||| |||||| || |||||||| ||
Sbjct 994502 GCAAAGGCAACAAGGCGCTGAGC-AAAGGAAGAGTCCTTGTCCTGGATCCACTTGATGGC 994560
Query 119684 CCAGTTGGCCTT 119695
||||| |||||
Sbjct 994561 CCAGTCAGCCTT 994572
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975035551800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |