Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq66 255 7e-63 seq35 104 3e-17 >seq66 Length=2244893 Score = 255 bits (282), Expect = 7e-63 Identities = 978/1502 (65%), Gaps = 43/1502 (3%) Strand=Plus/Plus Query 105833 ATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGC 105892 ||| | | ||||||| | | |||||| || ||| | | ||||| |||| || Sbjct 1020111 ATGCGGTTCTTCATAGCATCGGACCAGAGGCCAGTATCGACAAGATCCTTGAGAAGCCAG 1020170 Query 105893 TTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAG 105952 |||||||| | ||||| || || ||| | || | | |||||||| | |||||| Sbjct 1020171 GGGTTGACAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAG 1020230 Query 105953 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 106012 || || ||||||||||| || |||| ||| || | ||| ||| || ||||| || || Sbjct 1020231 GGCTCGAAGCATTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCG 1020290 Query 106013 ATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGT-- 106070 | | | |||||| |||| ||| | ||||| || | |||||||| ||||| | Sbjct 1020291 ACGAGCAAACTGTTGCGAATACCGTGCTCCTTAATCTGCTCCTTGAGCGAGTCCCACTCC 1020350 Query 106071 CGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGG 106130 | || | || | || || | | ||||||| ||||| || || | |||| || | || Sbjct 1020351 CACAGGTCAG-TGGGCTTGA-CATCCCACAAGTCAAACTGGAGAATGCCTTCAGAGGCGG 1020408 Query 106131 GAGAACCCTCAAATGTCTCAT-AGGAACCTTGGGCTTCAGCCAA--TTCACAGCTCGCCT 106187 | || |||| |||| ||||| |||| ||| | ||| | ||| | || || | |||| Sbjct 1020409 GTGATCCCTTGAATGACTCATAAGGACCCTCGATCTT--GGCAATCTCCATAGAT-GCCT 1020465 Query 106188 CCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTG 106247 | |||| ||||| || ||||| |||||||| | |||| ||| ||||| || Sbjct 1020466 CGAGGGCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTCAACTCGCGAGCTTCGGGTG 1020525 Query 106248 AATCAAATGCGTAGCGGCACA-AAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 106306 | || || | | || ||| | | || | || || ||||| |||||||| | |||| Sbjct 1020526 ATTCGAAAG-GAAGACGCAGAGCGAGGAAAGCGTCAGCAAGACCCTGAACACCAACACCA 1020584 Query 106307 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCA 106366 || |||| ||| || | ||| || || || || |||||| || | || || Sbjct 1020585 ATGGGTCGGTGGCGGCTGTTACTGTTGCGAGCCTCCTGAACGGGGTAGTAGTTCACATCG 1020644 Query 106367 ATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA 106426 |||| ||||| || || | ||| | ||| || | || ||||| || | | | ||| Sbjct 1020645 ATGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACATCGTGAAGCTTCTTAAAGTCA 1020704 Query 106427 AAAGTGCGAGTC-TCTTCA---TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCA 106482 | || || | || | | | |||| | || || || | || ||||| ||||| Sbjct 1020705 TA---GC-AGCCTTCGTTATAGTCGACAAAGGCAGGGAGAGCCAAAGAGGCCAAGTTGCA 1020760 Query 106483 AACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTT 106542 ||||| ||| || | | |||||| | || || || || | |||||| || Sbjct 1020761 GACAGCGACCTCGTCAGGGGCAGAGTACTCAACGATCTCAGTGCAGAGGTTGGAGCTTCG 1020820 Query 106543 AATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTA 106602 || || |||| ||||| ||||| ||||| |||||| ||||||||||| ||||| | Sbjct 1020821 GATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATAAA 1020880 Query 106603 GGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTA 106661 ||| | || ||||| ||||| | || || || | | ||||| | || | ||| | | Sbjct 1020881 GGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCTTCTG-AGCTCGGA 1020939 Query 106662 CAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA 106720 | | | | ||| | |||||| ||||||||| || || || || || || || Sbjct 1020940 TAGTCTTG-CGACCCTTGCCCTCCTTCTCGTACTTCTCATACAGAGCCTCGAATTCTTC- 1020997 Query 106721 CCCACCGC-GTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCA- 106777 ||| || ||| | || || || || || || || || | | || ||| | ||| Sbjct 1020998 GCCATAGCAGTCAGCAAGGCCAGG-GCATTCGTTGGGGCACATCAAAGTCCA--GTCCAA 1021054 Query 106778 -CCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC- 106835 || |||||| ||||||||||| || || || ||||| || | || || || | Sbjct 1021055 GTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAACAGGTCACG 1021114 Query 106836 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCG 106895 ||| || ||||||| | || ||||| || | ||||||||||| | || ||| | Sbjct 1021115 GGCACGGA-CCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCGG 1021173 Query 106896 CGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTT 106951 ||||||| ||||| || |||| || | | || | | | | ||| | || | Sbjct 1021174 CGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTG-CCACCCTGGTCG 1021232 Query 106952 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 107011 || || | || ||| ||| || || |||||||| || || ||||| | || ||| Sbjct 1021233 ACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGAGGTACCG 1021292 Query 107012 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071 || || || ||| ||| | || | | | |||| || || || ||||| Sbjct 1021293 TTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCCGATACCA 1021352 Query 107072 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131 |||||| ||| || || ||||| | | ||||| | |||||||| | || | Sbjct 1021353 CCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTCAATGCTG 1021412 Query 107132 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 107191 || ||||| || | | |||||||| ||||| ||| | | ||| |||||||| ||| Sbjct 1021413 TCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTACCAGCGTTG 1021472 Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCA 107249 |||||||| || | || || | || | | || |||||| || ||||||||| | Sbjct 1021473 AAGAGGGTGGGAGAGGCATGGGTAAAGAATTTGCT--GGACATGAGGTGGTATGTCTCAA 1021530 Query 107250 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGG 107309 |||| ||||||| || || | ||| | ||||||||||||| ||||| || | Sbjct 1021531 GGACACGCTCAATGTTGTCTCCCCAAACGCCAACAGCCACACGCATAATCATGTGCTGTG 1021590 Query 107310 GT 107311 || Sbjct 1021591 GT 1021592 >seq35 Length=1329723 Score = 104 bits (114), Expect = 3e-17 Identities = 343/522 (66%), Gaps = 11/522 (2%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| || ||||| || || || || || || || |||||| ||||| Sbjct 994370 GCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCA 994429 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||||||||| | |||||| | ||| | || | | || | ||| |||||||||| Sbjct 994430 GGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATA 994489 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAA 117452 ||||| || ||||| |||| |||||||| || ||||| ||| | |||| | | Sbjct 994490 CCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGA-AGAGTCCTTGTCCTGGAT 994548 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512 ||| || || ||||| | |||||||| || || || | || | ||||| | || Sbjct 994549 CCACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAA 994608 Query 117513 TAACT-GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTT 117571 | | | | | | | | ||||| | ||| |||| || | || || || | Sbjct 994609 GAGGTAGTTGCGCTGGCTGTGC-TCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCT 994667 Query 117572 CGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATC 117630 || || | | | ||| ||| | || | ||||||| | || || ||| ||| Sbjct 994668 CGGAGTGGATGTTCTCCATCATGATCTGGA-AACCGTAGAAGCATCGAGCCTCGGGGATC 994726 Query 117631 TGCACTTCATCCGC-AAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 117689 || || || |||| ||| | | ||||| ||||| || ||||| |||| Sbjct 994727 TGAACCTC-GCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAGC 994785 Query 117690 AAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCA 117746 |||||| |||||||||| ||||| | ||| || | || |||| || | ||||| Sbjct 994786 AAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCA 994845 Query 117747 GTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 117788 ||||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 994846 GTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 994887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979833906440