Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq44 147 5e-30
seq42 100 6e-16
>seq44
Length=3047126
Score = 147 bits (162), Expect = 5e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || ||||| ||| || || | ||||| |||
Sbjct 1396948 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 1396889
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||||||||| || ||||| | ||| || ||||| || |||||||| || ||||| ||
Sbjct 1396888 AGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 1396829
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || |||||||| ||| ||||| |||||||| | ||||||
Sbjct 1396828 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 1396769
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 1396768 CCCGTGAGGGTCTTGACGAAAATCTGCAT 1396740
Score = 143 bits (158), Expect = 6e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || ||||| |||| ||||||| ||||| |||
Sbjct 758561 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCG 758620
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| ||||| || |||||||| || || || ||||| ||||||||||| || ||||| ||
Sbjct 758621 AGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGG 758680
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || || || || ||||| ||| ||||| || ||||| | |||||
Sbjct 758681 ATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTG 758740
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | ||||||
Sbjct 758741 CCGGTGAGGGTCTTGACGAAGATTTGCAT 758769
Score = 125 bits (138), Expect = 2e-23
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || ||| ||| || || || ||||| ||| || || | || ||||| |||||
Sbjct 758058 GTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCCAGCTG 758117
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| |||||||| || || || ||||| || || || || || ||||| ||||| ||
Sbjct 758118 CTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGAATCTT 758177
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| ||||||||| || ||||| || || |||||||| || || | ||||| || ||
Sbjct 758178 TGACTTGACGTTGTCGATGGTATCAGATGACTCCACTTCCAGTGTGATTGTCTTGCCGGT 758237
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
|||||| || || || | |||||
Sbjct 758238 CAAAGTCTTGACAAAGATCTGCAT 758261
Score = 125 bits (138), Expect = 2e-23
Identities = 147/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| || || ||||| || || || ||||||||| || || | || || ||
Sbjct 758281 ACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCA 758340
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||||||||| || ||||| || || || ||||| ||||| || || || ||||| ||
Sbjct 758341 AGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGG 758400
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| |||||||| || || ||||| || ||||| | |||||
Sbjct 758401 ATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCCACCTCGAGGGTGATGGTCTTG 758460
Query 195112 CCTGTCAAAGTTTTTACGA 195130
|| || | ||| || ||||
Sbjct 758461 CCGGTGAGAGTCTTGACGA 758479
>seq42
Length=797865
Score = 100 bits (110), Expect = 6e-16
Identities = 139/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| || | || |||| ||||| ||||||||||| || ||||||||
Sbjct 706005 TTCTGGATGTTGTAGTCAGACAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 706064
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
| ||| || || || || || || || || ||||| || || || |||||| || ||
Sbjct 706065 AATCGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 706124
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132
|| ||||| || || || |||||||| | ||||| || |||| || || |||||
Sbjct 706125 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA- 706183
Query 195133 ACTT---GCATTT 195142
|||| ||||||
Sbjct 706184 ACTTTTCGCATTT 706196
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109479737804477
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |