Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq66 82.4 9e-11 >seq66 Length=2244893 Score = 82.4 bits (90), Expect = 9e-11 Identities = 213/325 (66%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 ||| ||||| || ||||| | | | | ||||| ||||| || || |||||||| | Sbjct 1020986 CTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATCAAAGT 1021045 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||| ||| | || | || | |||| || | ||| || ||||| ||||| | || Sbjct 1021046 CCAGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAGCGAGGAA 1021105 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | || | | | | ||||| ||||| ||| | || ||||| || || | Sbjct 1021106 CAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAACTCAAA 1021165 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | ||| || ||||| || || | || || || | |||| || || || || || || Sbjct 1021166 GACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTGCCACC 1021225 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 || || | ||||||||||| ||||| | |||| | ||| |||| ||||| || || Sbjct 1021226 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGA 1021285 Query 48425 TATACCATTGGTTCCCGAAATATAA 48449 |||| ||||| || | ||| ||| Sbjct 1021286 GGTACCGTTGGTGCCGGCAATGTAA 1021310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107879546840