Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq24 89.7 4e-13 >seq24 Length=1542676 Score = 89.7 bits (98), Expect = 4e-13 Identities = 253/384 (66%), Gaps = 16/384 (4%) Strand=Plus/Minus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 |||| || || || ||||||||| ||||| || |||||||| |||| | ||| | Sbjct 36798 TGTGACAGGGCGGCAGAGCCATGCTCTTAAAGTCCTTTGGGTTCCATGCGCTGAGGATCA 36739 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCC------TGATGAGGTCCACGGCGTTTTGCAGCTGAT 30121 | | | ||| | ||| |||| | || || | | |||| |||||| | Sbjct 36738 TTCTGCGGTCGTAGGGGCTGTTTCGCAGCTTGTGGATGATCTCGGC------CAGCTGGT 36685 Query 30122 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30181 | || ||| | || | |||||||| || || ||||| || || |||| || Sbjct 36684 CGACGCCCTTGCCGGCGTAGTCTGTTTGAGCATCGACATAGTCTGCGCCAAAGTGCCGCC 36625 Query 30182 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT-TG 30240 ||||||| ||||| || || |||||||| || | || | ||| || |||| | || Sbjct 36624 ACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACGTCGCGGTGGGTGA-GCCCGACGCTG 36566 Query 30241 TCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCT 30300 || | || || | ||| |||||| ||||||||||||| || ||| ||| ||| | Sbjct 36565 TCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCCACGTCGCTGAGGGCG 36506 Query 30301 TTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAA 30359 |||| ||| ||||| || |||||| || ||||| | | |||||| || Sbjct 36505 GTGGACGAGGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGCGCGGAGGAA 36447 Query 30360 GACCCTCTTGGTCGTGAGGAGGGG 30383 ||| | |||||| ||||| ||||| Sbjct 36446 GACTCGCTTGGTGGTGAGCAGGGG 36423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408616947616463