Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq66 313 5e-80 seq35 221 2e-52 >seq66 Length=2244893 Score = 313 bits (346), Expect = 5e-80 Identities = 1145/1758 (65%), Gaps = 86/1758 (5%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || |||| ||||||| ||| || || ||||||||||| ||||| Sbjct 1019832 ACTGTGAACTGGATAGGTGCAGCCGCAGCCTGGGTACGCAGGTAGTACATGCCAGTCTTG 1019891 Query 212613 AGGCC---CTTGCCCCAGCC-GTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATT 212668 || || ||| |||||| ||| | |||||| |||| | | ||| | ||| Sbjct 1019892 AGACCAAGCTT---CCAGCCAGTGAA-GTGCAT-GCTGGTAAT--CTTGCCC-----ATT 1019939 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 ||| ||||| || || | ||||| |||||| ||| || ||||| | | Sbjct 1019940 GTGGG-ATCCTT------CATGTGGATGTTCAAGGACTGGGACTGATCAATGAAAGCACC 1019992 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||| || | ||| | | ||| | | ||| |||| |||||| || |||||| | | Sbjct 1019993 ACGGTCGGCTGACATCTGGACGATGTGGCGCTGAGAGATCTCCCAAACAGTCTTGTACAG 1020052 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGT 212845 | |||| ||| | || | | ||| |||||||| | ||| || | | ||| | Sbjct 1020053 GGCCTTGATGTCGGCGGGAATGTTGGGAATGTTCTGGATAGAACCGTTCTCAGCAATGAT 1020112 Query 212846 CAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTG 212905 | | | ||| | ||| ||||||||| | | || ||||| || Sbjct 1020113 GCGGTTCTT---CATAGCATCGGACCAGAGGCCAGTATCGACAAGATCCTTGAGAAGCCA 1020169 Query 212906 AGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTA 212965 |||||||| | |||||| || || | || || | | |||||| | ||| || ||||| Sbjct 1020170 GGGGTTGACAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTA 1020229 Query 212966 GGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGC 213025 |||||||| || || ||||| ||||| ||||| | ||||||||| ||||||||||| || Sbjct 1020230 GGGCTCGAAGCATTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGC 1020289 Query 213026 CACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTC 213085 || || | |||||| | | |||||||| || | | ||| |||| Sbjct 1020290 GACGAGCAAACTGTTGCGAATACCGTGCTCCTTAATCTGCTCCTTGAGCG------AGTC 1020343 Query 213086 CCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTT 213145 ||| || ||| |||||| | ||| || | ||||| ||||||||| | ||||||| Sbjct 1020344 CCA-CTCCCA--CAGGTCAGTGGGCTTGACATCCCACAAGTCAAACTGGAGAATGCCTT- 1020399 Query 213146 GCTCACGGGGCTG--CCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAG 213203 | | | || || |||| | | || || || || | |||||| | ||| Sbjct 1020400 -CAGAGGCGGGTGATCCCTTGAATGACTCATAAGGACCCTCGATCTTGGCAATCTCCATA 1020458 Query 213204 GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCC 213263 || |||| |||||||||| ||||||||| ||||| || | | |||| | || || Sbjct 1020459 GATGCCTCGAGGGCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTCAACTCGCGAGCT 1020518 Query 213264 TCTGGGGACGTGAAGGGCATCATCAT-GCGTTGGAACACATCAGCCAGCCCCTGGACCCC 213322 || || || ||| || | || ||| |||| | ||||| || ||||| || || Sbjct 1020519 TCGGGTGATTCGAAAGGAAGACGCAGAGCGA-GGAAAGCGTCAGCAAGACCCTGAACACC 1020577 Query 213323 GATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGT 213381 | || ||||||| ||| | |||| ||| |||| ||||| | |||||| ||| Sbjct 1020578 AACACCAATGGGTCGGTGGCGGCTGTTACTGTTGCGAGC-CTCCTGAACGGGGTAGTAGT 1020636 Query 213382 TGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACT 213441 | |||||||| ||||||||| ||| |||| ||||| |||| | || | || Sbjct 1020637 TCACATCGATGATGCGGTTGAGGTTACGGACAACCACCTTGGTAACATCGTGAAGCTTCT 1020696 Query 213442 CGTGATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGG 213495 | || | |||| || || | ||||| |||| || || | || Sbjct 1020697 ------TAAAGTCATAGCAGCCTTCGTTATAGTCGACAAAGGCAGGGAGAGCCAAAGAGG 1020750 Query 213496 CCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGT 213555 ||| |||||| || || ||||| | || | | | |||||| | |||||| ||||| |||| Sbjct 1020751 CCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAACGATCTCAGTGCAGAGGT 1020810 Query 213556 TGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGA-ATCCTTG 213614 || || ||||||||| |||||||||| ||||| ||| ||| | |||| ||||||| Sbjct 1020811 TGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTT-GCGGTTGCAGGCATCCTTG 1020869 Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTAC 213674 || ||||| ||||| || ||||| ||||| | | || || | ||| || | | Sbjct 1020870 TAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCTTC 1020929 Query 213675 CTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCG 213734 || || | | | ||| | | | | |||||||| || || || | Sbjct 1020930 -TGAGCTCGGATAGTCTTGCGACCCTTGCCCTCCTT--CTCGTACTTCTCATACAGAGCC 1020986 Query 213735 TTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGG--ATGCG---GGACACATGA 213789 | |||||| | ||| || | ||| || | || |||| || || || ||||| | Sbjct 1020987 TCGAATTCTTCGCCATAG---CAGTC-AG-CAAGGCCAGGGCATTCGTTGGGGCACATCA 1021041 Query 213790 GGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCG 213848 |||||||| || | |||| || | || ||||||||| || |||| ||| || ||| Sbjct 1021042 AAGTCCAGTCCAAGTTCTTCTCA-ACACGCTTCATGAACAGATCAGGGATCCAGAGAGCG 1021100 Query 213849 GTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAG 213908 ||||||||| | || | ||| ||| || ||| ||||| || || || || Sbjct 1021101 AGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGAAC 1021160 Query 213909 TCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTG 213965 ||||||| || |||||||| ||||| | ||||||||||||||| || | || | ||| Sbjct 1021161 TCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGTTG 1021220 Query 213966 CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCG 214025 || |||||||| || ||||| ||||||||| || || | ||| | | ||| Sbjct 1021221 CCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCG 1021280 Query 214026 TTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC---TCAGGTTGCTCATG 214082 ||||| |||||||| || || || || ||||| | || | | ||| | | | Sbjct 1021281 TTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGG---ACG 1021337 Query 214083 GAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATG 214142 || || || ||||| || |||||| |||||||| || | | | ||| || | Sbjct 1021338 TTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAG 1021397 Query 214143 ATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTG 214202 || || | |||||||| || | | || || || |||||| || |||| | || || Sbjct 1021398 ATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCT-GAGCTTG 1021456 Query 214203 -GACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAG 214261 | | |||| |||||| || ||||| ||||||| | | || ||| | || | ||| Sbjct 1021457 TGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATGAG 1021516 Query 214262 CCTGTAGGTCTCCAGGAC 214279 ||| ||||| ||||| Sbjct 1021517 GTGGTATGTCTCAAGGAC 1021534 >seq35 Length=1329723 Score = 221 bits (244), Expect = 2e-52 Identities = 569/851 (67%), Gaps = 28/851 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| || ||| ||||||||||| Sbjct 994078 CTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTC 994137 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCA 47957 ||||||| |||||||||| | || || | | | || ||| | | |||| Sbjct 994138 CATGAAGTCAAAGGGGTTGGAGGACTTGTAAATCT-TCTCGTTGCCAAGAGCGACGAGCA 994196 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||| || || |||| ||||| | ||| |||||| ||||||||| | || | Sbjct 994197 GACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCCAGCAGAG 994256 Query 48018 ACAC-GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTAT-CTGCACGGCTTCCCCCACAAT 48075 ||| ||| | ||||| || | ||||| | ||| || ||| ||||| || | || Sbjct 994257 -CACAGGGGAGAGCCTCGGTCAAGAACTCTTGCTCGATTCTG-ACGGCATCAGTGATGAT 994314 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTG------GCATAGAGCAT 48129 || ||| | | ||| || | |||| ||| ||| | | ||||| Sbjct 994315 ----TTCACG-GATAATCTCC---TTGCTGGCGC-GGTTCTTCAGGTGAGAGTGGAGCAG 994365 Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||| |||||||| |||||| ||| ||||| || ||||||| ||||||||||| || Sbjct 994366 GCAAGCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAG 994425 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 |||||||||| || |||| ||||||||||| || | || || | || |||||| Sbjct 994426 GCCAGGCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAA 994485 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 ||| ||||| || || || || || || | || | || |||| || |||||| Sbjct 994486 GATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTG 994545 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 |||||| | |||||||| |||||||| |||||| || || ||||| ||||| Sbjct 994546 GATCCACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTT 994605 Query 48370 GAAGAGCTTCTTGCACTCAC-CTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 |||||| | |||| || | ||| ||| || ||||| || ||| | ||| Sbjct 994606 GAAGAGGTAGTTGCGCTGGCTGTGC-TCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGG 994664 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||| ||||||||| | ||||| | Sbjct 994665 TCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGGGA 994724 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||| || || | ||| | ||| | ||| ||||| ||||| || || || || |||| Sbjct 994725 TCTGAACCTCGCCGCTGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCGGAGGCAG 994784 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC----ATTC 48604 |||||||||| |||| || | ||| | ||||| | | | || || ||| Sbjct 994785 CAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAG-GCGGTTGTTC 994843 Query 48605 CAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCT 48664 ||| | || | || ||| ||| || | ||||| | ||||||||||| || || Sbjct 994844 CAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCC 994903 Query 48665 TTTTTGTACAT 48675 ||||||||||| Sbjct 994904 TTTTTGTACAT 994914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531274615040