Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq66 253 4e-62
seq35 226 5e-54
>seq66
Length=2244893
Score = 253 bits (280), Expect = 4e-62
Identities = 841/1281 (66%), Gaps = 59/1281 (5%)
Strand=Plus/Plus
Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478
||||||||||||||||||||||||||||| |||||| | ||| | || ||||| ||
Sbjct 1020468 AGGGCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTCAA-CTCGCGAGCTTCGGGTGA 1020526
Query 221479 AGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536
||| || | |||||| | | ||||| |||| || || ||||| || || | |||
Sbjct 1020527 TTCGAAAGGAAGACGCAG-AGCGAGGAAAG-CGTCAGCAAGACCCTGAACACCAACACCA 1020584
Query 221537 ATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594
||||| | ||| | ||||| | ||| | || ||| ||||| || |||| || |
Sbjct 1020585 ATGGGTCGGTGGCGGCTGTTACTGTTGCGAGC-CTCCTGA-ACGGGGTAGTAGTTCACAT 1020642
Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGAT 221654
|||| | ||||||||| | ||| |||||||| ||| | | || | |
Sbjct 1020643 CGATGATGCGGTTGAGGTTACG------GAC---AACCACCTTGGTAACATCGTGAAGCT 1020693
Query 221655 TG--AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712
| || || | || ||| |||| | || ||||| || || || |
Sbjct 1020694 TCTTAAAGTCA--TAGCAGCCTTCGTTATAG---TCGACAAAGGCAGGGAGAGCCAAAGA 1020748
Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772
||||| ||| || || || |||||||| | | |||| | |||||| || |||||
Sbjct 1020749 GGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAACGATCTCAGTGCAGAG 1020808
Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832
|||| || |||||| ||||||| || || || |||||| ||| || |||||
Sbjct 1020809 GTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTT 1020868
Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892
||| ||||||||||| |||||||| ||| ||| | || || || ||| || |
Sbjct 1020869 GTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCT- 1020927
Query 221893 TCTG-GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTAT 221945
|||| || | | ||| | |||| | | |||| ||| ||||||
Sbjct 1020928 TCTGAGCTCGGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCATAC------- 1020980
Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005
||||| | | || | ||| || || || | ||||| || || | ||| ||||
Sbjct 1020981 AGAGCCT--CGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACA 1021038
Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065
||| | |||||| | ||| | | || | || |||||| || || |||||||| || |
Sbjct 1021039 TCAAAGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAG 1021098
Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125
| | || || || | || || ||| ||| ||||| ||| || | || || | |
Sbjct 1021099 CGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGA 1021158
Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185
||||||| | || |||||||| ||||| || |||| ||| | || || || |||||||
Sbjct 1021159 ACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGT 1021218
Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAGC-GTTGAAGATGCGAAGGGTCGGTACCAGT 222244
|||||||||| || || || | || | |||||||| ||||| | || | |
Sbjct 1021219 TGCCACCCTGGTCGACGTATCTGGC-AGTGTTGTTGAAGACTCGAAGCATGGGGATGATA 1021277
Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG 222302
|||||||| |||||||||||| |||||| | || || | || ||| |||
Sbjct 1021278 CCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCAC---GGATACGGTGG 1021334
Query 222303 CAGA-CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361
| || |||||||||||| || || || |||||||| || |||| ||||||||
Sbjct 1021335 ACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCG 1021394
Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421
||| ||||| || ||| ||||| | || || ||| || || || |||| ||||| |
Sbjct 1021395 TAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCT 1021454
Query 222422 TTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATC 222481
| | || || ||||| || || |||||| ||| || |||||| | || |||||
Sbjct 1021455 TGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATG 1021514
Query 222482 AGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCA--TGGCGCATC 222539
|| | ||| ||||| | ||| | | |||||||| || || | || | | || |
Sbjct 1021515 AGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCC-CCAAACGCCAACAGCCACA-C 1021572
Query 222540 TCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGA 222597
||| ||||| ||| || | ||| ||| || | |||| || || || ||
Sbjct 1021573 GCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGCT--TCAGGAGATATGA 1021630
Query 222598 TTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGC 222657
||||| |||||||| || ||||| | | || ||||||| | ||| || | |||
Sbjct 1021631 CCGCTCCAGTGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACAATGGC 1021690
Query 222658 GGCGTCCAGCTCCGACTTGTG 222678
| ||| |||||| ||||||
Sbjct 1021691 AGAGTCAAGCTCCTCCTTGTG 1021711
Score = 100 bits (110), Expect = 5e-16
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| || || ||||| || || | || || | | |||||| | ||| || ||| | ||
Sbjct 1020173 GTTGACAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGG 1020232
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
|||| || || ||||||||||||||||| | |||||||| ||||||||||| || ||
Sbjct 1020233 CTCGAAGCATTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGAC 1020292
Query 221236 CAGCAGACTGTTGCG 221250
|||| |||||||||
Sbjct 1020293 GAGCAAACTGTTGCG 1020307
>seq35
Length=1329723
Score = 226 bits (250), Expect = 5e-54
Identities = 564/857 (66%), Gaps = 24/857 (3%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | |||||||| ||||| | || |||||||||||||||||||||||||
Sbjct 994923 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTG 994864
Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592
||||||| || ||| |||| || || || | | |||||| || | || ||
Sbjct 994863 TCCAAGGATCTGCACGACTGGAACAACCGC-CTGAACGATGACGAGAAGTACTTCATCTC 994805
Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652
|| | |||| |||||||| ||||| || || || || |||||||| ||| |||| |
Sbjct 994804 TCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGAGCG 994745
Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712
|||| | | || || ||| | ||||| || ||||||||||||||||| ||
Sbjct 994744 TTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGAT 994685
Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772
|| || | ||||| ||| || || ||| | || ||| | | || |
Sbjct 994684 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGCACAG 994625
Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832
| || | | || || ||||| ||| ||| || ||||| | ||||||
Sbjct 994624 CCAGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGAAGGCTGA 994565
Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892
|||||||| ||||||||| | | || | || | |||| |||| || || |||||
Sbjct 994564 CTGGGCCATCAAGTGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGCCTTGTTGCCTT 994505
Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952
|||||| || ||||| ||||| |||||||| | ||||| ||||||||||||||||| |
Sbjct 994504 TGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAA 994445
Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012
|| || |||||| || ||| ||| ||||||||||||||| | |||||||| ||
Sbjct 994444 GAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGCCT 994385
Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC--TCAA 26070
|||| || ||||| ||||||||| || | ||| || | || | | |||
Sbjct 994384 GCACACCGACTTTGCTTGCCTGCTCCACTC---TCAC---CTGAAGAACCGCGCCAGCAA 994331
Query 26071 -GAGA----CCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125
|||| |||| | ||||||| || || || |||||| | |||||
Sbjct 994330 GGAGATTATCCGTGAA----ATCATCACTGATGCCGTCAGAATCGAGCAAGAGTTCTTGA 994275
Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTG 26185
||||||||||| || || |||| || |||||||
Sbjct 994274 CCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATTG 994215
Query 26186 AGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTAC-AGTACGCCT 26244
||| ||| ||||| | |||||| | || || || | | ||| ||| | ||
Sbjct 994214 AGTTTGTTGCCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAGATTTACAAGTCCTCC- 994156
Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304
||||| || ||||| ||||| ||||| || ||| || |||||||||||||| || |||
Sbjct 994155 AACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAG 994096
Query 26305 AGGGTCGGCGACTATCA 26321
| |||||||| || ||
Sbjct 994095 CGTGTCGGCGAGTACCA 994079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928843279016640
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