Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq66 253 4e-62 seq35 226 5e-54 >seq66 Length=2244893 Score = 253 bits (280), Expect = 4e-62 Identities = 841/1281 (66%), Gaps = 59/1281 (5%) Strand=Plus/Plus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478 ||||||||||||||||||||||||||||| |||||| | ||| | || ||||| || Sbjct 1020468 AGGGCAGCGTGGTAGATGGTCTCAAAGATTTGCTTGTTCAA-CTCGCGAGCTTCGGGTGA 1020526 Query 221479 AGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 ||| || | |||||| | | ||||| |||| || || ||||| || || | ||| Sbjct 1020527 TTCGAAAGGAAGACGCAG-AGCGAGGAAAG-CGTCAGCAAGACCCTGAACACCAACACCA 1020584 Query 221537 ATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 ||||| | ||| | ||||| | ||| | || ||| ||||| || |||| || | Sbjct 1020585 ATGGGTCGGTGGCGGCTGTTACTGTTGCGAGC-CTCCTGA-ACGGGGTAGTAGTTCACAT 1020642 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGAT 221654 |||| | ||||||||| | ||| |||||||| ||| | | || | | Sbjct 1020643 CGATGATGCGGTTGAGGTTACG------GAC---AACCACCTTGGTAACATCGTGAAGCT 1020693 Query 221655 TG--AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 | || || | || ||| |||| | || ||||| || || || | Sbjct 1020694 TCTTAAAGTCA--TAGCAGCCTTCGTTATAG---TCGACAAAGGCAGGGAGAGCCAAAGA 1020748 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||||| ||| || || || |||||||| | | |||| | |||||| || ||||| Sbjct 1020749 GGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTCAACGATCTCAGTGCAGAG 1020808 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 |||| || |||||| ||||||| || || || |||||| ||| || ||||| Sbjct 1020809 GTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTT 1020868 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||||||||| |||||||| ||| ||| | || || || ||| || | Sbjct 1020869 GTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCTAGGATGGAGTACCACAGCT- 1020927 Query 221893 TCTG-GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTAT 221945 |||| || | | ||| | |||| | | |||| ||| |||||| Sbjct 1020928 TCTGAGCTCGGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTCTCATAC------- 1020980 Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005 ||||| | | || | ||| || || || | ||||| || || | ||| |||| Sbjct 1020981 AGAGCCT--CGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACA 1021038 Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065 ||| | |||||| | ||| | | || | || |||||| || || |||||||| || | Sbjct 1021039 TCAAAGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAGGGATCCAGAGAG 1021098 Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125 | | || || || | || || ||| ||| ||||| ||| || | || || | | Sbjct 1021099 CGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGGTCAAGGA 1021158 Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 ||||||| | || |||||||| ||||| || |||| ||| | || || || ||||||| Sbjct 1021159 ACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGGCGCTTGT 1021218 Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAGC-GTTGAAGATGCGAAGGGTCGGTACCAGT 222244 |||||||||| || || || | || | |||||||| ||||| | || | | Sbjct 1021219 TGCCACCCTGGTCGACGTATCTGGC-AGTGTTGTTGAAGACTCGAAGCATGGGGATGATA 1021277 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG 222302 |||||||| |||||||||||| |||||| | || || | || ||| ||| Sbjct 1021278 CCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCAC---GGATACGGTGG 1021334 Query 222303 CAGA-CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361 | || |||||||||||| || || || |||||||| || |||| |||||||| Sbjct 1021335 ACGTTCAGGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCG 1021394 Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421 ||| ||||| || ||| ||||| | || || ||| || || || |||| ||||| | Sbjct 1021395 TAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCT 1021454 Query 222422 TTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATC 222481 | | || || ||||| || || |||||| ||| || |||||| | || ||||| Sbjct 1021455 TGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGAATTTGCTGGACATG 1021514 Query 222482 AGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCA--TGGCGCATC 222539 || | ||| ||||| | ||| | | |||||||| || || | || | | || | Sbjct 1021515 AGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCC-CCAAACGCCAACAGCCACA-C 1021572 Query 222540 TCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGA 222597 ||| ||||| ||| || | ||| ||| || | |||| || || || || Sbjct 1021573 GCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGCT--TCAGGAGATATGA 1021630 Query 222598 TTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGC 222657 ||||| |||||||| || ||||| | | || ||||||| | ||| || | ||| Sbjct 1021631 CCGCTCCAGTGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACAATGGC 1021690 Query 222658 GGCGTCCAGCTCCGACTTGTG 222678 | ||| |||||| |||||| Sbjct 1021691 AGAGTCAAGCTCCTCCTTGTG 1021711 Score = 100 bits (110), Expect = 5e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || | | |||||| | ||| || ||| | || Sbjct 1020173 GTTGACAACCTGGAACTCGCCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGG 1020232 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || || ||||||||||||||||| | |||||||| ||||||||||| || || Sbjct 1020233 CTCGAAGCATTCATTGTTGCCCAGGATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGAC 1020292 Query 221236 CAGCAGACTGTTGCG 221250 |||| ||||||||| Sbjct 1020293 GAGCAAACTGTTGCG 1020307 >seq35 Length=1329723 Score = 226 bits (250), Expect = 5e-54 Identities = 564/857 (66%), Gaps = 24/857 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||| ||||| | || ||||||||||||||||||||||||| Sbjct 994923 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATCTG 994864 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| || ||| |||| || || || | | |||||| || | || || Sbjct 994863 TCCAAGGATCTGCACGACTGGAACAACCGC-CTGAACGATGACGAGAAGTACTTCATCTC 994805 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | |||| |||||||| ||||| || || || || |||||||| ||| |||| | Sbjct 994804 TCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGAGCG 994745 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | | || || ||| | ||||| || ||||||||||||||||| || Sbjct 994744 TTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGAT 994685 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| || || ||| | || ||| | | || | Sbjct 994684 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGCACAG 994625 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 | || | | || || ||||| ||| ||| || ||||| | |||||| Sbjct 994624 CCAGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGAAGGCTGA 994565 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||||| ||||||||| | | || | || | |||| |||| || || ||||| Sbjct 994564 CTGGGCCATCAAGTGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGCCTTGTTGCCTT 994505 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 |||||| || ||||| ||||| |||||||| | ||||| ||||||||||||||||| | Sbjct 994504 TGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAA 994445 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 || || |||||| || ||| ||| ||||||||||||||| | |||||||| || Sbjct 994444 GAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGCCT 994385 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC--TCAA 26070 |||| || ||||| ||||||||| || | ||| || | || | | ||| Sbjct 994384 GCACACCGACTTTGCTTGCCTGCTCCACTC---TCAC---CTGAAGAACCGCGCCAGCAA 994331 Query 26071 -GAGA----CCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125 |||| |||| | ||||||| || || || |||||| | ||||| Sbjct 994330 GGAGATTATCCGTGAA----ATCATCACTGATGCCGTCAGAATCGAGCAAGAGTTCTTGA 994275 Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTG 26185 ||||||||||| || || |||| || ||||||| Sbjct 994274 CCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGCCACCCTGATGAAGCAGTACATTG 994215 Query 26186 AGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTAC-AGTACGCCT 26244 ||| ||| ||||| | |||||| | || || || | | ||| ||| | || Sbjct 994214 AGTTTGTTGCCGATCGTCTGCTCGTCGCTCTTGGCAACGAGAAGATTTACAAGTCCTCC- 994156 Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| || ||||| ||||| ||||| || ||| || |||||||||||||| || ||| Sbjct 994155 AACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAG 994096 Query 26305 AGGGTCGGCGACTATCA 26321 | |||||||| || || Sbjct 994095 CGTGTCGGCGAGTACCA 994079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843279016640