Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq44 93.3 3e-13
>seq44
Length=3047126
Score = 93.3 bits (102), Expect = 3e-13
Identities = 121/165 (73%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665
||||||| | ||| || |||||||| ||||| || || ||||| || || |||||||||
Sbjct 758603 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 758662
Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGT 480724
|| || |||||||| || ||||| || ||| || ||||| || | | | |
Sbjct 758663 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATAGTGTCGGAAGACTCCA-C 758721
Query 480725 TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| ||||| || || || |||||||| ||||| ||||| |||||
Sbjct 758722 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 758766
Score = 87.8 bits (96), Expect = 1e-11
Identities = 151/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609
||||||||| || ||||| || || ||| || || | || ||||| ||| || |
Sbjct 758268 ACGAAGACGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATC-GCTCAGGG 758326
Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669
| | || ||||| ||||| |||||||| || ||||| || || || ||||| || |
Sbjct 758327 TGCGACCGTCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATAC 758386
Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728
| |||||||| || ||||| ||||| ||||| ||||| | || | | | |
Sbjct 758387 CCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCGGATGACTCCACCT-CG 758445
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762
||||| || || || |||||||||||||| ||||
Sbjct 758446 AGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGA 758479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268173580774388
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |