Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq66 260 2e-64 seq35 104 3e-17 >seq66 Length=2244893 Score = 260 bits (288), Expect = 2e-64 Identities = 978/1502 (65%), Gaps = 45/1502 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 |||||| ||||| | ||||| || || | ||| | || || ||||||| |||| Sbjct 1021591 CCACAGCACATGATTATGCGTGTGGCTGTTGGCGTTTGGGGAGACAACATTGAGCGTGTC 1021532 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTCT 75329 | ||||||||| || |||||| || | | || | || || | || ||||||| Sbjct 1021531 CTTGAGACATACCACCTCATGTCC--AGCAAATTCTTTACCCATGCCTCTCCCACCCTCT 1021474 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| |||||||| ||| | | ||| ||||| |||||||| | | || ||||| | Sbjct 1021473 TCAACGCTGGTACCCCACAAGCTCAGCTGTCCTCATGCTTCCTGGTGGACATGAAGGACG 1021414 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 || || | |||||||| | ||||| | | ||||| || || ||| ||||| Sbjct 1021413 ACAGCATTGAGGGTATCTACGACACTCTAAAGACATGTGCCATGATTTCCAAGATGGCTG 1021354 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 75509 | ||||| || || || |||| | | | || | ||| ||| || || | Sbjct 1021353 GTGGTATCGGCCTGAACGTCCACCGTATCCGTGCTACGGGCTCTTACATTGCCGGCACCA 1021294 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | ||| || | ||||| || || |||||||| || || ||| ||| || | || | Sbjct 1021293 ACGGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACG 1021234 Query 75570 TAAATCAAGCGGGGCGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 | | || | | ||| | || || || | || ||||| | || || ||||| Sbjct 1021233 TCGACCAGG-GTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCTTGGCAC 1021175 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 |||||| || | ||||||||||| | || ||||| || | ||||||| || ||| Sbjct 1021174 GCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGG-TCCGTGC 1021116 Query 75686 A-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744 | || || || | || ||||| || || || ||||||||||| |||||| || Sbjct 1021115 CCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAGAAGAA 1021056 Query 75745 --TGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGAC-GCGGTGG 75800 ||| | ||| || | | || || || || || || || || | ||| || ||| Sbjct 1021055 CTTGGAC--TGGACTTTGATGTGCCCCAACGAATGC-CCTGGCCTTGCTGACTGCTATGG 1020999 Query 75801 GTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCGA 75857 || || || || || || || ||||| || ||||||| | | ||| || Sbjct 1020998 C-GAAGAATTCGAGGCTCTGTATGAGAAGTACGAGAAGGAGGGCAAGGGTCGCAA---GA 1020943 Query 75858 CTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACA 75916 || | | ||| | || | | ||| | | || || | | ||||| |||||||| | Sbjct 1020942 CTATCCGAGCT-CAGAAGCTGTGGTACTCCATCCTAGAGGCCCAGACTGAGACTGGTAAC 1020884 Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976 || | |||||||||||||||||| || ||| ||||| ||||| ||||| ||||||| Sbjct 1020883 CCCTTTATGCTTTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACC 1020824 Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036 ||| ||||| || || ||||| || || | |||||| | | || ||| ||| Sbjct 1020823 ATCCGAAGCTCCAACCTCTGCACTGAGATCGTTGAGTACTCTGCCCCTGACGAGGTCGCT 1020764 Query 76037 GTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAA---TGAAGA-GACTCGCAC 76092 || ||||| ||||| || | || || || | |||| | | | || | || || Sbjct 1020763 GTCTGCAACTTGGCCTCTTTGGCTCTCCCTGCCTTTGTCGACTATAACGAAGGCT-GC-- 1020707 Query 76093 TTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 | ||| | | | || ||||| || | || ||| | ||| | || || ||||| | Sbjct 1020706 -TATGACTTTAAGAAGCTTCACGATGTTACCAAGGTGGTTGTCCGTAACCTCAACCGCAT 1020648 Query 76153 CATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACC 76212 ||| || || | || |||||| || || || || ||| | || ||| |||| Sbjct 1020647 CATCGATGTGAACTACTACCCCGTTCAGGAGGCTCGCAACAGTAACAGCCGCCACCGACC 1020588 Query 76213 TATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTT-TGTGCCGCTACGCATTTG 76271 |||||| | |||||||| ||||| || || | || | | ||| || | | || | Sbjct 1020587 CATTGGTGTTGGTGTTCAGGGTCTTGCTGACGCTTTCCTCGCTCTGCGTCTTC-CTTTCG 1020529 Query 76272 ATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCC 76331 | ||| ||||| ||| |||| | |||||||| ||||| || ||||| ||| Sbjct 1020528 AATCACCCGAAGCTCGCGAGTTGAACAAGCAAATCTTTGAGACCATCTACCACGCTGCCC 1020469 Query 76332 TGGAGGCGAGTTGTGA-ATTGGCTGAAGCCCAAGGTTCCT-ATGAGACATTTGAGGGTTC 76389 | ||||| | || |||| | ||| | ||| |||| ||||| |||| |||| || Sbjct 1020468 TCGAGGCATCTATGGAGATTGCC--AAGATCGAGGGTCCTTATGAGTCATTCAAGGGATC 1020411 Query 76390 TCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTA 76449 ||||| || |||| | || |||||||| ||||||| | | || || | || | || Sbjct 1020410 ACCCGCCTCTGAAGGCATTCTCCAGTTTGACTTGTGGGATG-TCAAGCCCA-CTGACCTG 1020353 Query 76450 CG--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 76507 | | ||||| |||||||| | || |||||| | ||| |||| |||||| | | Sbjct 1020352 TGGGAGTGGGACTCGCTCAAGGAGCAGATTAAGGAGCACGGTATTCGCAACAGTTTGCTC 1020293 Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567 | || || ||||| || ||| ||| | || ||| |||| || ||||||||||| || Sbjct 1020292 GTCGCCCCCATGCCCACTGCCAGCACTTCCCAGATCCTGGGCAACAATGAATGCTTCGAG 1020233 Query 76568 CCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAAC 76627 || ||||| | |||||||||| | || | ||| || || ||||| |||||||| Sbjct 1020232 CCCTACACCTCCAACATCTACCAGCGACGTGTCCTTGCTGGCGAGTTCCAGGTTGTCAAC 1020173 Query 76628 AAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTC 76687 || |||| || || | | ||| ||||||||| | | ||||||| | | | Sbjct 1020172 CCCTGGCTTCTCAAGGATCTTGTCGATACTGGCCTCTGGTCCGATGCTATGAAGAACCGC 1020113 Query 76688 AT 76689 || Sbjct 1020112 AT 1020111 >seq35 Length=1329723 Score = 104 bits (114), Expect = 3e-17 Identities = 343/522 (66%), Gaps = 11/522 (2%) Strand=Plus/Minus Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCC---TGAAT 64770 ||||| || ||||| ||||| ||||||| ||||| |||||||||| | || |||| Sbjct 994887 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 994828 Query 64771 GAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 64830 || | || ||| | ||||| |||||||||| |||||||||| ||||| || ||| Sbjct 994827 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATT 994768 Query 64831 GTTTTTGAGAATATCAATAACAATTTT-GCGGATGAAGTGCAGATAAGCGAAGCGCGCTC 64889 || ||||| | | ||| |||| || || ||||| ||| || || | Sbjct 994767 GTCAACGAGAACCTGGTCGAGCGTTTCAGCGGC-GAGGTTCAGATCCCCGAGGCTCGATG 994709 Query 64890 ATTCTACGCATATCAATGCCATAATGAA-ATGGTTCATGGCGAAACATATTCAAAATTGA 64948 ||||||| | || | ||| ||| | | | || ||| || || || | | Sbjct 994708 CTTCTACGGTT-TCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 994650 Query 64949 TTGACAAATACATTAAGGATGGATCTGAAAAGAAGC-AGTTATTTGAAGCCATCCAAACT 65007 | |||| ||| | ||||| | | | | | | | | || | ||||| | || Sbjct 994649 TCGACACCTACGTCAAGGA-GCACAGCCAGCGCAACTACCTCTTCAACGCCATTGAGACC 994591 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCG 65066 | || || || |||||||| | ||||| || || ||| | | |||| | ||| Sbjct 994590 ATTCCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGACTCT 994531 Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 ||||| || |||||||| |||| ||||| || ||||||||||||||| ||| | Sbjct 994530 -TCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGC 994472 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 || | | || | ||| | |||||| | ||||||||||| ||||| |||||| || Sbjct 994471 CTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAA 994412 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || || || || || ||||| || ||| || ||||| Sbjct 994411 CGAGCTCATCTCTCGTGACGAGGGCCTGCACACCGACTTTGC 994370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568623117280