Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq66 260 2e-64
seq35 104 3e-17
>seq66
Length=2244893
Score = 260 bits (288), Expect = 2e-64
Identities = 978/1502 (65%), Gaps = 45/1502 (3%)
Strand=Plus/Minus
Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271
|||||| ||||| | ||||| || || | ||| | || || ||||||| ||||
Sbjct 1021591 CCACAGCACATGATTATGCGTGTGGCTGTTGGCGTTTGGGGAGACAACATTGAGCGTGTC 1021532
Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTCT 75329
| ||||||||| || |||||| || | | || | || || | || |||||||
Sbjct 1021531 CTTGAGACATACCACCTCATGTCC--AGCAAATTCTTTACCCATGCCTCTCCCACCCTCT 1021474
Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389
|||| |||||||| ||| | | ||| ||||| |||||||| | | || ||||| |
Sbjct 1021473 TCAACGCTGGTACCCCACAAGCTCAGCTGTCCTCATGCTTCCTGGTGGACATGAAGGACG 1021414
Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449
|| || | |||||||| | ||||| | | ||||| || || ||| |||||
Sbjct 1021413 ACAGCATTGAGGGTATCTACGACACTCTAAAGACATGTGCCATGATTTCCAAGATGGCTG 1021354
Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 75509
| ||||| || || || |||| | | | || | ||| ||| || || |
Sbjct 1021353 GTGGTATCGGCCTGAACGTCCACCGTATCCGTGCTACGGGCTCTTACATTGCCGGCACCA 1021294
Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569
| ||| || | ||||| || || |||||||| || || ||| ||| || | || |
Sbjct 1021293 ACGGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAACAACACTGCCAGATACG 1021234
Query 75570 TAAATCAAGCGGGGCGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625
| | || | | ||| | || || || | || ||||| | || || |||||
Sbjct 1021233 TCGACCAGG-GTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTCGAGCCTTGGCAC 1021175
Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685
|||||| || | ||||||||||| | || ||||| || | ||||||| || |||
Sbjct 1021174 GCCGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCACGGCAAGGAAGAGG-TCCGTGC 1021116
Query 75686 A-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744
| || || || | || ||||| || || || ||||||||||| |||||| ||
Sbjct 1021115 CCGTGACCTGTTCCTCGCTCTCTGGATCCCTGATCTGTTCATGAAGCGTGTTGAGAAGAA 1021056
Query 75745 --TGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGAC-GCGGTGG 75800
||| | ||| || | | || || || || || || || || | ||| || |||
Sbjct 1021055 CTTGGAC--TGGACTTTGATGTGCCCCAACGAATGC-CCTGGCCTTGCTGACTGCTATGG 1020999
Query 75801 GTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCGA 75857
|| || || || || || || ||||| || ||||||| | | ||| ||
Sbjct 1020998 C-GAAGAATTCGAGGCTCTGTATGAGAAGTACGAGAAGGAGGGCAAGGGTCGCAA---GA 1020943
Query 75858 CTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACA 75916
|| | | ||| | || | | ||| | | || || | | ||||| |||||||| |
Sbjct 1020942 CTATCCGAGCT-CAGAAGCTGTGGTACTCCATCCTAGAGGCCCAGACTGAGACTGGTAAC 1020884
Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976
|| | |||||||||||||||||| || ||| ||||| ||||| ||||| |||||||
Sbjct 1020883 CCCTTTATGCTTTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACC 1020824
Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036
||| ||||| || || ||||| || || | |||||| | | || ||| |||
Sbjct 1020823 ATCCGAAGCTCCAACCTCTGCACTGAGATCGTTGAGTACTCTGCCCCTGACGAGGTCGCT 1020764
Query 76037 GTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAA---TGAAGA-GACTCGCAC 76092
|| ||||| ||||| || | || || || | |||| | | | || | || ||
Sbjct 1020763 GTCTGCAACTTGGCCTCTTTGGCTCTCCCTGCCTTTGTCGACTATAACGAAGGCT-GC-- 1020707
Query 76093 TTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152
| ||| | | | || ||||| || | || ||| | ||| | || || ||||| |
Sbjct 1020706 -TATGACTTTAAGAAGCTTCACGATGTTACCAAGGTGGTTGTCCGTAACCTCAACCGCAT 1020648
Query 76153 CATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACC 76212
||| || || | || |||||| || || || || ||| | || ||| ||||
Sbjct 1020647 CATCGATGTGAACTACTACCCCGTTCAGGAGGCTCGCAACAGTAACAGCCGCCACCGACC 1020588
Query 76213 TATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTT-TGTGCCGCTACGCATTTG 76271
|||||| | |||||||| ||||| || || | || | | ||| || | | || |
Sbjct 1020587 CATTGGTGTTGGTGTTCAGGGTCTTGCTGACGCTTTCCTCGCTCTGCGTCTTC-CTTTCG 1020529
Query 76272 ATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCC 76331
| ||| ||||| ||| |||| | |||||||| ||||| || ||||| |||
Sbjct 1020528 AATCACCCGAAGCTCGCGAGTTGAACAAGCAAATCTTTGAGACCATCTACCACGCTGCCC 1020469
Query 76332 TGGAGGCGAGTTGTGA-ATTGGCTGAAGCCCAAGGTTCCT-ATGAGACATTTGAGGGTTC 76389
| ||||| | || |||| | ||| | ||| |||| ||||| |||| |||| ||
Sbjct 1020468 TCGAGGCATCTATGGAGATTGCC--AAGATCGAGGGTCCTTATGAGTCATTCAAGGGATC 1020411
Query 76390 TCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTA 76449
||||| || |||| | || |||||||| ||||||| | | || || | || | ||
Sbjct 1020410 ACCCGCCTCTGAAGGCATTCTCCAGTTTGACTTGTGGGATG-TCAAGCCCA-CTGACCTG 1020353
Query 76450 CG--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 76507
| | ||||| |||||||| | || |||||| | ||| |||| |||||| | |
Sbjct 1020352 TGGGAGTGGGACTCGCTCAAGGAGCAGATTAAGGAGCACGGTATTCGCAACAGTTTGCTC 1020293
Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567
| || || ||||| || ||| ||| | || ||| |||| || ||||||||||| ||
Sbjct 1020292 GTCGCCCCCATGCCCACTGCCAGCACTTCCCAGATCCTGGGCAACAATGAATGCTTCGAG 1020233
Query 76568 CCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAAC 76627
|| ||||| | |||||||||| | || | ||| || || ||||| ||||||||
Sbjct 1020232 CCCTACACCTCCAACATCTACCAGCGACGTGTCCTTGCTGGCGAGTTCCAGGTTGTCAAC 1020173
Query 76628 AAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTC 76687
|| |||| || || | | ||| ||||||||| | | ||||||| | | |
Sbjct 1020172 CCCTGGCTTCTCAAGGATCTTGTCGATACTGGCCTCTGGTCCGATGCTATGAAGAACCGC 1020113
Query 76688 AT 76689
||
Sbjct 1020112 AT 1020111
>seq35
Length=1329723
Score = 104 bits (114), Expect = 3e-17
Identities = 343/522 (66%), Gaps = 11/522 (2%)
Strand=Plus/Minus
Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCC---TGAAT 64770
||||| || ||||| ||||| ||||||| ||||| |||||||||| | || ||||
Sbjct 994887 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAAC 994828
Query 64771 GAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 64830
|| | || ||| | ||||| |||||||||| |||||||||| ||||| || |||
Sbjct 994827 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCTGCCTCCGACGGCATT 994768
Query 64831 GTTTTTGAGAATATCAATAACAATTTT-GCGGATGAAGTGCAGATAAGCGAAGCGCGCTC 64889
|| ||||| | | ||| |||| || || ||||| ||| || || |
Sbjct 994767 GTCAACGAGAACCTGGTCGAGCGTTTCAGCGGC-GAGGTTCAGATCCCCGAGGCTCGATG 994709
Query 64890 ATTCTACGCATATCAATGCCATAATGAA-ATGGTTCATGGCGAAACATATTCAAAATTGA 64948
||||||| | || | ||| ||| | | | || ||| || || || | |
Sbjct 994708 CTTCTACGGTT-TCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 994650
Query 64949 TTGACAAATACATTAAGGATGGATCTGAAAAGAAGC-AGTTATTTGAAGCCATCCAAACT 65007
| |||| ||| | ||||| | | | | | | | | || | ||||| | ||
Sbjct 994649 TCGACACCTACGTCAAGGA-GCACAGCCAGCGCAACTACCTCTTCAACGCCATTGAGACC 994591
Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCG 65066
| || || || |||||||| | ||||| || || ||| | | |||| | |||
Sbjct 994590 ATTCCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGACTCT 994531
Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126
||||| || |||||||| |||| ||||| || ||||||||||||||| ||| |
Sbjct 994530 -TCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGAGC 994472
Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186
|| | | || | ||| | |||||| | ||||||||||| ||||| |||||| ||
Sbjct 994471 CTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAA 994412
Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228
|| || || || || || ||||| || ||| || |||||
Sbjct 994411 CGAGCTCATCTCTCGTGACGAGGGCCTGCACACCGACTTTGC 994370
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596568623117280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |