Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2 260 2e-64 seq44 174 2e-38 seq121 134 2e-26 >seq2 Length=1230088 Score = 260 bits (288), Expect = 2e-64 Identities = 554/825 (67%), Gaps = 13/825 (2%) Strand=Plus/Plus Query 196061 GCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCT 196120 ||||| ||||| || | ||||| || || |||||||| ||||| || |||||| | || Sbjct 960473 GCTCTGCGTCGTCTCCGAACTGCTTGCGAGCGTGCCAAGCGAACCCTTTCTTCTTCTGCC 960532 Query 196121 CAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACC 196180 || || ||||||| || || | || || || |||||||||| || | || ||| Sbjct 960533 CAGACCTCCATTGAGATCGACTCTCTCTTCGAGGGTGTTGACTTCTACACCTCCATCACC 960592 Query 196181 CGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAA 196240 ||||| ||||| || ||| | | ||| | || | || | || || || Sbjct 960593 CGTGCCCGTTTCGAGGAGCTGTGCCAGGATCTCTTCCGATCCACCATCCAGCCCGTCGAC 960652 Query 196241 CAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGA 196300 | || ||| || || ||||| || ||||| |||| | || || ||||| || || Sbjct 960653 CGTGTCCTTGCCGATGCCAAGATCGACAAGTCCCAGGTCCACGAGATCGTCCTCGTCGGT 960712 Query 196301 GGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGAT 196360 ||||| |||||||| || || || || | || | || |||||| || || Sbjct 960713 GGATCCACCCGTATCCCCCGTATCCAGAAGCTCATTACCGACTACTTCAACGGCAAGGAG 960772 Query 196361 TTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCT 196420 ||||| | |||||||| ||||| || ||||| || ||||| ||||| ||||||||| Sbjct 960773 CCCAACAAGTCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCTGCCGTCCAGGCTGCT 960832 Query 196421 ATTCTCTCAGGTGTTGACAATAAT--AACGTCCA------AGATCTTCTGCTACTTGATG 196472 || || || || ||||| | | | ||||| ||||| ||||| || |||| Sbjct 960833 ATCCTGTC---TGGTGACACTTCTTCCAAGTCCACCAACGAGATC--CTGCTTCTCGATG 960887 Query 196473 TTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATA 196532 | || ||| | || || ||| | || || || ||||| | ||||| || | || Sbjct 960888 TCGCTCCCCTGTCTCTCGGTATCGAGACTGCTGGTGGCATGATGACCAAGCTCATCCCCC 960947 Query 196533 GGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAAC 196592 | ||||| || || || || |||||| | ||||| || || | || || || || | Sbjct 960948 GCAACACCACCATCCCCACCAAGAAGTCCGAGGTCTTCTCCACCTTCTCTGACAACCAGC 961007 Query 196593 CAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTAC 196652 | ||||| | || || || || || || || || || | ||||| ||| | || | Sbjct 961008 CCGGTGTCCTCATCCAGGTCTACGAGGGTGAGCGTCAGCGCACCAAGGACAACAACCTTC 961067 Query 196653 TTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATG 196712 | || | ||||| | || || || || | || || | |||||||| |||||| | | Sbjct 961068 TCGGCAAGTTCGAGCTCACTGGCATCCCCCCCGCCCCTCGTGGTGTTCCCCAGATTGAGG 961127 Query 196713 TTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTG 196772 | |||||| | || || || || || | |||||| | || | || |||| ||| Sbjct 961128 TCACCTTCGACGTTGATGCCAACGGTATCATGAACGTCTCCGCCGTTGAGAAGGGCACTG 961187 Query 196773 GCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTG 196832 |||| || | |||||||| || ||||| |||||||| || || || |||||||| |||| Sbjct 961188 GCAAGTCCAACAAGATTGTCATCACCAACGACAAGGGCCGCCTGTCCAAGGAGGAGATTG 961247 Query 196833 AACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 | || ||| || ||||| || ||||||| ||| || || |||| Sbjct 961248 AGCGCATGCTTTCCGATGCCGAGAAGTACAAGGAGGAGGATGAGG 961292 Score = 239 bits (264), Expect = 6e-58 Identities = 500/736 (68%), Gaps = 7/736 (1%) Strand=Plus/Plus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG-TGTAGA 195363 |||||||| | || ||||| ||||| || || ||| | | | | || || ||| || Sbjct 959660 GGTATCGACCTGGGTACTACGTACTCTTGCGTCGGTATCTTCCGTGAGGACCGATGT-GA 959718 Query 195364 GATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAA 195423 || || | || ||||| || ||||| || || || |||| ||||||||| || || | Sbjct 959719 TATCATTGCCAACGACCAGGGTAACCGAACGACCCCTTCGTTCGTTGCCTTCACCGACAC 959778 Query 195424 TGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGT 195483 || ||||| |||| |||||||| || || ||| || |||||||| || || || Sbjct 959779 CGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGT 959838 Query 195484 CTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATAT 195543 ||| ||||| ||||| | |||||||||||||| | ||| | || || | || || Sbjct 959839 CTTCGACGCCAAGCGATTGATTGGTCGCAAGTTCGCCGATCCCGAGGTTCAGGCTGACAT 959898 Query 195544 AAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGA 195603 ||| ||| | | | ||| | || | |||| ||||| | | | || || Sbjct 959899 GAAGCACTTCCCCT-TCAAGATTGTCGACAAG-GGCT-CCAAGCCCGTCGTCGAGGTCGA 959955 Query 195604 ATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAA 195663 || | || |||| || | || ||||||| || || || || ||| | ||| || Sbjct 959956 GTTCAAGGGCGAGACCAAGAACTTCACTCCCGAGGAGATCTCCTCCATGATCCTGACCAA 960015 Query 195664 GATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGT 195723 |||| ||||| || || | | | |||| | || || || | || || || ||||| Sbjct 960016 GATGCGTGAGACCGCCGAGGCCTACCTGGGCACCACCGTCAACAACGCCGTCGTCACTGT 960075 Query 195724 ACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGG 195783 || || ||||||| || || || ||||| || |||||||| | | ||||| || Sbjct 960076 CCCCGCCTACTTCAACGACAGCCAGCGTCAGGCCACCAAGGACGCCGGTCTCATTGCCGG 960135 Query 195784 TCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGA 195843 ||| ||| || | || ||||| || || || || ||||| ||||| || ||||| || Sbjct 960136 TCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCTGCTGCCATTGCCTACGGTCTTGA 960195 Query 195844 CAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGA 195903 |||||| || | || || || | ||||| ||||| || |||||||| || || Sbjct 960196 CAAGAAGGTCGAGGGCGAGCGCAACGTCCTCATCTTCGATCTTGGCGGTGGTACTTTCGA 960255 Query 195904 TGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATAC 195963 |||||| || || | ||||| | ||||| ||||| || ||| | ||||| ||||| || Sbjct 960256 TGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGACAC 960315 Query 195964 TCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGTTCC 196022 ||| | |||||||| |||||||| ||||| || || |||||| | |||||| Sbjct 960316 TCACTTGGGTGGTGAGGATTTCGACAACCGTCTGGTCAACCACTTTGTC-AACGAGTTCA 960374 Query 196023 GTCGAAAGAATAAGAA 196038 || ||||| ||||| Sbjct 960375 AGCGCAAGAACAAGAA 960390 >seq44 Length=3047126 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || ||||| || || || || |||||||| ||||| ||||| || Sbjct 1396740 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 1396799 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| ||||||| || || ||||| |||||||| || || ||| Sbjct 1396800 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 1396859 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||| | || ||||||||||| ||||| || ||||| || ||||| || |||||| Sbjct 1396860 CAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAAC 1396919 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090 | || |||||||| || || ||||| || || | || || ||||||| Sbjct 1396920 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTG 1396968 Score = 168 bits (186), Expect = 9e-37 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || || || || || || || || |||||||||||||| ||||| || || || || || Sbjct 758477 GTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCCGATACCATTGAC 758418 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 ||| |||| ||||||| || || ||||| || || || ||||| ||||| || || || Sbjct 758417 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTCATC 758358 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 ||||||||||| |||||||| || || || ||||| ||||||||| | || |||||| Sbjct 758357 TTTGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTGAGCGATTACAACATCCAGAAGGAG 758298 Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| || |||||||| || | ||||| |||||| Sbjct 758297 TCTACCCTCCACCTTGTCCTTCGTCTTCGTGGTGGT 758262 Score = 163 bits (180), Expect = 4e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || ||||| || || || || |||||||||||||| ||||| || Sbjct 758769 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 758710 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || ||||||| || || ||||| |||||||| || || ||| Sbjct 758709 GACACTATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 758650 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || ||||| || || || || ||||| || || || | || |||||| Sbjct 758649 CAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 758590 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| || || ||||| || || | || || |||||| Sbjct 758589 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGTGGTGGT 758542 >seq121 Length=402543 Score = 134 bits (148), Expect = 2e-26 Identities = 476/734 (65%), Gaps = 21/734 (3%) Strand=Plus/Minus Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 || ||||| ||||| ||||| ||||||| || | || || ||||| || ||||||||| Sbjct 95114 GCCGTTGTCACTGTCCCTGCCTACTTCAACGACGCTCAGCGTCAGGCTACCAAGGACGCT 95055 Query 195770 GCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATT 195829 | | ||||| | || | ||| | || ||||| || || || || || || ||| Sbjct 95054 GGTCAGATTGCTGACCTTGATGTTCTCCGTATCATCAACGAGCCTACCGCTGCCGCTATT 94995 Query 195830 GCTTATGGTCTGGACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTC 195886 || || ||||||| | |||| || | || || || |||||| ||||| Sbjct 94994 GCCTACGGTCTGGGCTCCGGCAAGACTGAGAAGGAGCGTAACGTCCTGATCTACGATCTT 94935 Query 195887 GGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAG 195946 ||||||||||| || ||||| || || |||| || | || ||| | ||| || ||| Sbjct 94934 GGTGGTGGTACTTTCGATGTTTCCCTGCTCAGCATCCAGGGCGGTGTCTTCACTGTCAAG 94875 Query 195947 GCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCAT 196006 ||||| |||||||| || || | ||||| | || ||||| | | | | | | | Sbjct 94874 GCTACCGCTGGTGACACCCACTTGGGTGGCCAGGACTTCGACAC-CAACCTGTTGGACCA 94816 Query 196007 TTGTCTG-ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAA--ATCCTAGGGCT 196063 || | | |||||| || ||| ||||| | | | | || | || | ||| Sbjct 94815 CTGCAAGAAGGAGTTCATCCGCAAGTCCAAGAAGG--ACCCCAGCAACGACCCCCGTGCT 94758 Query 196064 CTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACG--GCTC 196121 || || | || | ||||| || || |||||||| || || ||||| | || || | Sbjct 94757 CTCCGAAGACTCCGTACTGCTTGCGAGCGTGCCAAGCGTACCCTCTC--CAGCGGTGCCC 94700 Query 196122 AAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCC 196181 | | | |||||||||| || | || || || |||||| | || || |||| Sbjct 94699 AGGCCACCATTGAGATTGACTCTCTCTTCGAGGGTGAGGACTTCACCATGACCATCACCC 94640 Query 196182 GTGCACGTTTTGAAGAGTTAAACTCTGATTTGTT-TAGGAAGTGTA---TGGAACCTGTT 196237 |||| ||||| || ||| | ||| | | || | | ||| | || |||||| Sbjct 94639 GTGCTCGTTTCGAGGAGCTCAACGCCAAGGCCTTCTCCG----GTACCCTCGAGCCTGTT 94584 Query 196238 GAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTG 196297 | || || || || || ||||| ||| ||||| || |||||||| || Sbjct 94583 GCTCAGGTCCTCAAGGATGCCGCTATGGAGAAGAGCGCCGTTGAGGAGATTGTCCTCGTC 94524 Query 196298 GGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAA 196357 || || || |||||||| || ||||| || || | || || |||||| || || Sbjct 94523 GGTGGTTCTACCCGTATCCCCAAGATCCAGAAGCTTCTGTCCGAGTTCTTCGATGGCAAG 94464 Query 196358 GATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCT 196417 | | | || | |||||||| ||||| || || || || ||||| ||||| ||||| Sbjct 94463 AAGCTCGAGAAGAGCATCAACCCCGATGAGGCCGTCGCCTACGGTGCCGCCGTCCAGGCC 94404 Query 196418 GCTATTCTCTCAGG 196431 | ||| ||||| || Sbjct 94403 GGTATCCTCTCCGG 94390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657861322750320