Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq2 260 2e-64
seq44 174 2e-38
seq121 134 2e-26
>seq2
Length=1230088
Score = 260 bits (288), Expect = 2e-64
Identities = 554/825 (67%), Gaps = 13/825 (2%)
Strand=Plus/Plus
Query 196061 GCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCT 196120
||||| ||||| || | ||||| || || |||||||| ||||| || |||||| | ||
Sbjct 960473 GCTCTGCGTCGTCTCCGAACTGCTTGCGAGCGTGCCAAGCGAACCCTTTCTTCTTCTGCC 960532
Query 196121 CAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACC 196180
|| || ||||||| || || | || || || |||||||||| || | || |||
Sbjct 960533 CAGACCTCCATTGAGATCGACTCTCTCTTCGAGGGTGTTGACTTCTACACCTCCATCACC 960592
Query 196181 CGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAA 196240
||||| ||||| || ||| | | ||| | || | || | || || ||
Sbjct 960593 CGTGCCCGTTTCGAGGAGCTGTGCCAGGATCTCTTCCGATCCACCATCCAGCCCGTCGAC 960652
Query 196241 CAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGA 196300
| || ||| || || ||||| || ||||| |||| | || || ||||| || ||
Sbjct 960653 CGTGTCCTTGCCGATGCCAAGATCGACAAGTCCCAGGTCCACGAGATCGTCCTCGTCGGT 960712
Query 196301 GGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGAT 196360
||||| |||||||| || || || || | || | || |||||| || ||
Sbjct 960713 GGATCCACCCGTATCCCCCGTATCCAGAAGCTCATTACCGACTACTTCAACGGCAAGGAG 960772
Query 196361 TTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCT 196420
||||| | |||||||| ||||| || ||||| || ||||| ||||| |||||||||
Sbjct 960773 CCCAACAAGTCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCTGCCGTCCAGGCTGCT 960832
Query 196421 ATTCTCTCAGGTGTTGACAATAAT--AACGTCCA------AGATCTTCTGCTACTTGATG 196472
|| || || || ||||| | | | ||||| ||||| ||||| || ||||
Sbjct 960833 ATCCTGTC---TGGTGACACTTCTTCCAAGTCCACCAACGAGATC--CTGCTTCTCGATG 960887
Query 196473 TTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATA 196532
| || ||| | || || ||| | || || || ||||| | ||||| || | ||
Sbjct 960888 TCGCTCCCCTGTCTCTCGGTATCGAGACTGCTGGTGGCATGATGACCAAGCTCATCCCCC 960947
Query 196533 GGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAAC 196592
| ||||| || || || || |||||| | ||||| || || | || || || || |
Sbjct 960948 GCAACACCACCATCCCCACCAAGAAGTCCGAGGTCTTCTCCACCTTCTCTGACAACCAGC 961007
Query 196593 CAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTAC 196652
| ||||| | || || || || || || || || || | ||||| ||| | || |
Sbjct 961008 CCGGTGTCCTCATCCAGGTCTACGAGGGTGAGCGTCAGCGCACCAAGGACAACAACCTTC 961067
Query 196653 TTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATG 196712
| || | ||||| | || || || || | || || | |||||||| |||||| | |
Sbjct 961068 TCGGCAAGTTCGAGCTCACTGGCATCCCCCCCGCCCCTCGTGGTGTTCCCCAGATTGAGG 961127
Query 196713 TTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTG 196772
| |||||| | || || || || || | |||||| | || | || |||| |||
Sbjct 961128 TCACCTTCGACGTTGATGCCAACGGTATCATGAACGTCTCCGCCGTTGAGAAGGGCACTG 961187
Query 196773 GCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTG 196832
|||| || | |||||||| || ||||| |||||||| || || || |||||||| ||||
Sbjct 961188 GCAAGTCCAACAAGATTGTCATCACCAACGACAAGGGCCGCCTGTCCAAGGAGGAGATTG 961247
Query 196833 AACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877
| || ||| || ||||| || ||||||| ||| || || ||||
Sbjct 961248 AGCGCATGCTTTCCGATGCCGAGAAGTACAAGGAGGAGGATGAGG 961292
Score = 239 bits (264), Expect = 6e-58
Identities = 500/736 (68%), Gaps = 7/736 (1%)
Strand=Plus/Plus
Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG-TGTAGA 195363
|||||||| | || ||||| ||||| || || ||| | | | | || || ||| ||
Sbjct 959660 GGTATCGACCTGGGTACTACGTACTCTTGCGTCGGTATCTTCCGTGAGGACCGATGT-GA 959718
Query 195364 GATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAA 195423
|| || | || ||||| || ||||| || || || |||| ||||||||| || || |
Sbjct 959719 TATCATTGCCAACGACCAGGGTAACCGAACGACCCCTTCGTTCGTTGCCTTCACCGACAC 959778
Query 195424 TGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGT 195483
|| ||||| |||| |||||||| || || ||| || |||||||| || || ||
Sbjct 959779 CGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGT 959838
Query 195484 CTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATAT 195543
||| ||||| ||||| | |||||||||||||| | ||| | || || | || ||
Sbjct 959839 CTTCGACGCCAAGCGATTGATTGGTCGCAAGTTCGCCGATCCCGAGGTTCAGGCTGACAT 959898
Query 195544 AAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGA 195603
||| ||| | | | ||| | || | |||| ||||| | | | || ||
Sbjct 959899 GAAGCACTTCCCCT-TCAAGATTGTCGACAAG-GGCT-CCAAGCCCGTCGTCGAGGTCGA 959955
Query 195604 ATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAA 195663
|| | || |||| || | || ||||||| || || || || ||| | ||| ||
Sbjct 959956 GTTCAAGGGCGAGACCAAGAACTTCACTCCCGAGGAGATCTCCTCCATGATCCTGACCAA 960015
Query 195664 GATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGT 195723
|||| ||||| || || | | | |||| | || || || | || || || |||||
Sbjct 960016 GATGCGTGAGACCGCCGAGGCCTACCTGGGCACCACCGTCAACAACGCCGTCGTCACTGT 960075
Query 195724 ACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGG 195783
|| || ||||||| || || || ||||| || |||||||| | | ||||| ||
Sbjct 960076 CCCCGCCTACTTCAACGACAGCCAGCGTCAGGCCACCAAGGACGCCGGTCTCATTGCCGG 960135
Query 195784 TCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGA 195843
||| ||| || | || ||||| || || || || ||||| ||||| || ||||| ||
Sbjct 960136 TCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCTGCTGCCATTGCCTACGGTCTTGA 960195
Query 195844 CAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGA 195903
|||||| || | || || || | ||||| ||||| || |||||||| || ||
Sbjct 960196 CAAGAAGGTCGAGGGCGAGCGCAACGTCCTCATCTTCGATCTTGGCGGTGGTACTTTCGA 960255
Query 195904 TGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATAC 195963
|||||| || || | ||||| | ||||| ||||| || ||| | ||||| ||||| ||
Sbjct 960256 TGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGACAC 960315
Query 195964 TCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGTTCC 196022
||| | |||||||| |||||||| ||||| || || |||||| | ||||||
Sbjct 960316 TCACTTGGGTGGTGAGGATTTCGACAACCGTCTGGTCAACCACTTTGTC-AACGAGTTCA 960374
Query 196023 GTCGAAAGAATAAGAA 196038
|| ||||| |||||
Sbjct 960375 AGCGCAAGAACAAGAA 960390
>seq44
Length=3047126
Score = 174 bits (192), Expect = 2e-38
Identities = 176/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || || || || ||||| || || || || |||||||| ||||| ||||| ||
Sbjct 1396740 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 1396799
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| ||| |||| ||||||| || || ||||| |||||||| || || |||
Sbjct 1396800 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 1396859
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| ||| | || ||||||||||| ||||| || ||||| || ||||| || ||||||
Sbjct 1396860 CAGCGATTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAAC 1396919
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090
| || |||||||| || || ||||| || || | || || |||||||
Sbjct 1396920 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTG 1396968
Score = 168 bits (186), Expect = 9e-37
Identities = 167/216 (77%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933
|| || || || || || || || |||||||||||||| ||||| || || || || ||
Sbjct 758477 GTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCCGATACCATTGAC 758418
Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993
||| |||| ||||||| || || ||||| || || || ||||| ||||| || || ||
Sbjct 758417 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTCATC 758358
Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053
||||||||||| |||||||| || || || ||||| ||||||||| | || ||||||
Sbjct 758357 TTTGCTGGTAAGCAGCTTGAGGACGGTCGCACCCTGAGCGATTACAACATCCAGAAGGAG 758298
Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
||||| || |||||||| || | ||||| ||||||
Sbjct 758297 TCTACCCTCCACCTTGTCCTTCGTCTTCGTGGTGGT 758262
Score = 163 bits (180), Expect = 4e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||||||||| || || ||||| || || || || |||||||||||||| ||||| ||
Sbjct 758769 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 758710
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || | || ||||||| || || ||||| |||||||| || || |||
Sbjct 758709 GACACTATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 758650
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || || || || ||||| || || || || ||||| || || || | || ||||||
Sbjct 758649 CAGCGTCTGATCTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 758590
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
| || |||||||| || || ||||| || || | || || ||||||
Sbjct 758589 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGTGGTGGT 758542
>seq121
Length=402543
Score = 134 bits (148), Expect = 2e-26
Identities = 476/734 (65%), Gaps = 21/734 (3%)
Strand=Plus/Minus
Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769
|| ||||| ||||| ||||| ||||||| || | || || ||||| || |||||||||
Sbjct 95114 GCCGTTGTCACTGTCCCTGCCTACTTCAACGACGCTCAGCGTCAGGCTACCAAGGACGCT 95055
Query 195770 GCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATT 195829
| | ||||| | || | ||| | || ||||| || || || || || || |||
Sbjct 95054 GGTCAGATTGCTGACCTTGATGTTCTCCGTATCATCAACGAGCCTACCGCTGCCGCTATT 94995
Query 195830 GCTTATGGTCTGGACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTC 195886
|| || ||||||| | |||| || | || || || |||||| |||||
Sbjct 94994 GCCTACGGTCTGGGCTCCGGCAAGACTGAGAAGGAGCGTAACGTCCTGATCTACGATCTT 94935
Query 195887 GGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAG 195946
||||||||||| || ||||| || || |||| || | || ||| | ||| || |||
Sbjct 94934 GGTGGTGGTACTTTCGATGTTTCCCTGCTCAGCATCCAGGGCGGTGTCTTCACTGTCAAG 94875
Query 195947 GCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCAT 196006
||||| |||||||| || || | ||||| | || ||||| | | | | | | |
Sbjct 94874 GCTACCGCTGGTGACACCCACTTGGGTGGCCAGGACTTCGACAC-CAACCTGTTGGACCA 94816
Query 196007 TTGTCTG-ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAA--ATCCTAGGGCT 196063
|| | | |||||| || ||| ||||| | | | | || | || | |||
Sbjct 94815 CTGCAAGAAGGAGTTCATCCGCAAGTCCAAGAAGG--ACCCCAGCAACGACCCCCGTGCT 94758
Query 196064 CTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACG--GCTC 196121
|| || | || | ||||| || || |||||||| || || ||||| | || || |
Sbjct 94757 CTCCGAAGACTCCGTACTGCTTGCGAGCGTGCCAAGCGTACCCTCTC--CAGCGGTGCCC 94700
Query 196122 AAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCC 196181
| | | |||||||||| || | || || || |||||| | || || ||||
Sbjct 94699 AGGCCACCATTGAGATTGACTCTCTCTTCGAGGGTGAGGACTTCACCATGACCATCACCC 94640
Query 196182 GTGCACGTTTTGAAGAGTTAAACTCTGATTTGTT-TAGGAAGTGTA---TGGAACCTGTT 196237
|||| ||||| || ||| | ||| | | || | | ||| | || ||||||
Sbjct 94639 GTGCTCGTTTCGAGGAGCTCAACGCCAAGGCCTTCTCCG----GTACCCTCGAGCCTGTT 94584
Query 196238 GAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTG 196297
| || || || || || ||||| ||| ||||| || |||||||| ||
Sbjct 94583 GCTCAGGTCCTCAAGGATGCCGCTATGGAGAAGAGCGCCGTTGAGGAGATTGTCCTCGTC 94524
Query 196298 GGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAA 196357
|| || || |||||||| || ||||| || || | || || |||||| || ||
Sbjct 94523 GGTGGTTCTACCCGTATCCCCAAGATCCAGAAGCTTCTGTCCGAGTTCTTCGATGGCAAG 94464
Query 196358 GATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCT 196417
| | | || | |||||||| ||||| || || || || ||||| ||||| |||||
Sbjct 94463 AAGCTCGAGAAGAGCATCAACCCCGATGAGGCCGTCGCCTACGGTGCCGCCGTCCAGGCC 94404
Query 196418 GCTATTCTCTCAGG 196431
| ||| ||||| ||
Sbjct 94403 GGTATCCTCTCCGG 94390
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657861322750320
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