Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq35 127 6e-24
seq121 122 3e-22
seq66 118 3e-21
seq44 102 2e-16
seq2 87.8 5e-12
>seq35
Length=1329723
Score = 127 bits (140), Expect = 6e-24
Identities = 251/369 (68%), Gaps = 2/369 (1%)
Strand=Plus/Minus
Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348
|| || ||||| | |||| || || ||| || || | ||||| |||||| ||
Sbjct 994737 GGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGATGGAGAAC 994678
Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG 133408
||||| || || || || || || || || ||| |||| || | ||||
Sbjct 994677 ATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGCACAGCCAGCGC 994618
Query 133409 CACAAACTATTCAACGCCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGC 133467
|| | || |||||||||||| | || ||||||| || ||||| ||||||||||
Sbjct 994617 AACTACCTCTTCAACGCCATT-GAGACCATTCCTTGCATCCGTAAGAAGGCTGACTGGGC 994559
Query 133468 TATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGT 133527
|| || ||||||||||||||| | |||||| || || ||||| |||||||
Sbjct 994558 CATCAAGTGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGC 994499
Query 133528 AGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGG 133587
|| ||||| || || ||||| || || || ||| || || ||||| || ||| | ||
Sbjct 994498 CGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGG 994439
Query 133588 TATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACAC 133647
| | | ||||| ||| || || ||||| || || || | ||||||| || |||||
Sbjct 994438 TCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGCCTGCACAC 994379
Query 133648 CGAATTTGC 133656
||| |||||
Sbjct 994378 CGACTTTGC 994370
>seq121
Length=402543
Score = 122 bits (134), Expect = 3e-22
Identities = 183/260 (70%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643
|||| | ||| | |||||| |||||||| | ||| || ||||| |||||||| |||
Sbjct 147542 TTGACGAGACGTCTCTGAATGTAACCAGTCTCGGCTGTCTTGACAGCGGTATCAATAAGA 147601
Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703
|| ||||||| |||| || |||||||| | ||| ||| || || | | | |
Sbjct 147602 CCTTCACGACCGGCCATGGCGTGGAAGAAAAATTCTGACGGAGTAAGGCCACGGAGATAC 147661
Query 302704 GAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGG 302763
||| |||| || || || || ||||| || || | ||| |||||| || || || ||
Sbjct 147662 GAGTTCTCTACAAAGCCGCGAGCCTCTGGAGAGTAATCGTCCTTGGTGAAATGAGGAAGC 147721
Query 302764 GTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCAC 302823
|| | || || ||||| |||| ||||||||||| || || |||||||||| | |
Sbjct 147722 GTTCGGTACTTGAAGCCGAATGGAATACGCTTTCCTTCGACAATCTGCTGTCCGACAAGC 147781
Query 302824 GAAATCATCTGCGAAATATT 302843
| |||| || ||||||||
Sbjct 147782 GCTGTCATTTGAGAAATATT 147801
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/140 (75%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | ||| || |||||| | || ||||| |||||| | |||||||||
Sbjct 146753 AGAATTTCCTTGAGACGAGGCACACCAAGTGTGACGTT---CTTGGAAGACACACCAGCA 146809
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| |||||||||||||| || | || || | || |||||||| || |||||||
Sbjct 146810 AAATGGAAAGTATTCAGTGTCATCTGGGTGGCGGGTTCACCAATGGACTGAGCCGCAAGA 146869
Query 301933 ATACCAACCATTTCTCCTGG 301952
| |||||||||||| || ||
Sbjct 146870 ACACCAACCATTTCACCAGG 146889
>seq66
Length=2244893
Score = 118 bits (130), Expect = 3e-21
Identities = 555/877 (63%), Gaps = 11/877 (1%)
Strand=Plus/Plus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| || || |||||| ||| ||||| || || |||||| || | |||||||||||
Sbjct 1020785 GTACTCAACGATCTCAGTGCAGAGGTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTT 1020844
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| | ||| || ||||||||||| || || | ||| | || ||||| |||| ||
Sbjct 1020845 GCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGC 1020904
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
|| || || ||| || | | || || |||| |||| |||
Sbjct 1020905 CTCTAGGATGGAGTACCACAGCTTCTGAGCTCGGATAGTCTTGCGACCCTTGCCCTCCTT 1020964
Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869
||| || ||| |||||| | | | || || || || || ||| || ||||||||
Sbjct 1020965 CTCGTACTTCTCATACAGAGCCTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCA 1021024
Query 155870 CTTATCGGGGCAAAACAGCGACCAA---ATTTTATTACCGATTACACGCTCCATAAATAC 155926
| | |||||| | || | ||| | || || | | |||||| ||| || |
Sbjct 1021025 TTCGTTGGGGCACATCAAAGTCCAGTCCAAGTTCTTCTCAA---CACGCTTCATGAACAG 1021081
Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986
|||| ||| | ||| ||| ||||| | || ||| || | |||||| ||
Sbjct 1021082 ATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTT 1021141
Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046
||| || || || | ||| || | ||| | || ||||| || || || |||||
Sbjct 1021142 CTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAA 1021201
Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103
|||| | |||| |||||||| || || || | ||||| || |||||||| |
Sbjct 1021202 GGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCG 1021261
Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163
||||| || || ||||| ||||| || || ||||| ||| ||| | || || | |
Sbjct 1021262 AAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGC 1021321
Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATT 156222
|| | | || | | || || |||||||| | |||| || ||||| || |||
Sbjct 1021322 ACGGATACGGTGGACGTTCAGGCCGATACCACCAG-CCATCTTGGAAATCATGGCACATG 1021380
Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282
||||| ||| | | | ||||| ||||| || || | ||| | || |||| |
Sbjct 1021381 TCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATG 1021440
Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAAT 156342
| | |||| | |||| || ||||||||||| || || || | ||||| ||||
Sbjct 1021441 AGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGA 1021500
Query 156343 ACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATAC 156402
| || | ||||| | ||||||||| | ||||| || || || |
Sbjct 1021501 ATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAACGC 1021560
Query 156403 AGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCA 156462
| || || | ||| ||| ||||| || ||||| |||||| ||||||| ||
Sbjct 1021561 CAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGCTTCA 1021620
Query 156463 GAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
| || |||| || ||||| || || || ||||| ||
Sbjct 1021621 GGAGATATGACCGCTCCAGTGTCTTGAAGCCGAAGTA 1021657
>seq44
Length=3047126
Score = 102 bits (112), Expect = 2e-16
Identities = 140/193 (73%), Gaps = 6/193 (3%)
Strand=Plus/Minus
Query 251468 CCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAAC 251527
||||| |||| | ||||||||||| ||||||||||||||| |||||||| ||||| |
Sbjct 525591 CCTTGAGGAAGGACGCTGCACCGTGTGCAATCATACAATCACGTTCCATTTCTCCGAATC 525532
Query 251528 GAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGAC 251587
| ||||||||||| ||||| | |||||| | ||||| || || | | || |||||
Sbjct 525531 GGAGACCACCATCTCGAGCACGACCCTCCACTGGCTGCCGTGTCATGATCTGCACAGGAC 525472
Query 251588 CGATGGAGC---GGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATG 251644
| |||| ||| ||| ||| || | ||||| || ||| ||||||||| |||
Sbjct 525471 C--ACGAGCTCTGGC-ATGGATCTTGTCGTCCACCATGTGGCGGAGTCGCTGGTAGTATG 525415
Query 251645 CGGGACCGATGAA 251657
|| || | |||
Sbjct 525414 TCGGTCCAAAGAA 525402
>seq2
Length=1230088
Score = 87.8 bits (96), Expect = 5e-12
Identities = 133/188 (71%), Gaps = 1/188 (1%)
Strand=Plus/Minus
Query 251475 GAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGAC 251533
||||| |||| ||||| | | ||||| ||||||||| |||||||| || | ||||||||
Sbjct 943901 GAAGCTGAGAAGCACCATAGGCAATCAGACAATCACGTTCCATTTCTCCCAGACGAAGAC 943842
Query 251534 CACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGG 251593
|||| || || | | ||| |||| ||||| ||||| ||| | | | || ||| |
Sbjct 943841 CACCGTCTCGCGATCGACCTTCGGTGGGCTGTCGAGTCAGAATGGCTCTGGGGCCGCGAG 943782
Query 251594 AGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGA 251653
|| || ||| || | ||||| ||||| ||||| |||||| | || |||
Sbjct 943781 CACGAGAGTGCATCTTGTCTTGCACCATGTGCTTCAGACGTTGGTAGTAGATTGGGCCGT 943722
Query 251654 TGAAGATG 251661
||||||||
Sbjct 943721 TGAAGATG 943714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471815129646147
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