Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq35 127 6e-24 seq121 122 3e-22 seq66 118 3e-21 seq44 102 2e-16 seq2 87.8 5e-12 >seq35 Length=1329723 Score = 127 bits (140), Expect = 6e-24 Identities = 251/369 (68%), Gaps = 2/369 (1%) Strand=Plus/Minus Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348 || || ||||| | |||| || || ||| || || | ||||| |||||| || Sbjct 994737 GGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGATGGAGAAC 994678 Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG 133408 ||||| || || || || || || || || ||| |||| || | |||| Sbjct 994677 ATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGCACAGCCAGCGC 994618 Query 133409 CACAAACTATTCAACGCCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGC 133467 || | || |||||||||||| | || ||||||| || ||||| |||||||||| Sbjct 994617 AACTACCTCTTCAACGCCATT-GAGACCATTCCTTGCATCCGTAAGAAGGCTGACTGGGC 994559 Query 133468 TATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGT 133527 || || ||||||||||||||| | |||||| || || ||||| ||||||| Sbjct 994558 CATCAAGTGGATCCAGGACAAGGACTCTTCCTTTGCTCAGCGCCTTGTTGCCTTTGCTGC 994499 Query 133528 AGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGG 133587 || ||||| || || ||||| || || || ||| || || ||||| || ||| | || Sbjct 994498 CGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCCATCTTCTGGCTCAAGAAGAGAGG 994439 Query 133588 TATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACAC 133647 | | | ||||| ||| || || ||||| || || || | ||||||| || ||||| Sbjct 994438 TCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGCCTGCACAC 994379 Query 133648 CGAATTTGC 133656 ||| ||||| Sbjct 994378 CGACTTTGC 994370 >seq121 Length=402543 Score = 122 bits (134), Expect = 3e-22 Identities = 183/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 |||| | ||| | |||||| |||||||| | ||| || ||||| |||||||| ||| Sbjct 147542 TTGACGAGACGTCTCTGAATGTAACCAGTCTCGGCTGTCTTGACAGCGGTATCAATAAGA 147601 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703 || ||||||| |||| || |||||||| | ||| ||| || || | | | | Sbjct 147602 CCTTCACGACCGGCCATGGCGTGGAAGAAAAATTCTGACGGAGTAAGGCCACGGAGATAC 147661 Query 302704 GAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGG 302763 ||| |||| || || || || ||||| || || | ||| |||||| || || || || Sbjct 147662 GAGTTCTCTACAAAGCCGCGAGCCTCTGGAGAGTAATCGTCCTTGGTGAAATGAGGAAGC 147721 Query 302764 GTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCAC 302823 || | || || ||||| |||| ||||||||||| || || |||||||||| | | Sbjct 147722 GTTCGGTACTTGAAGCCGAATGGAATACGCTTTCCTTCGACAATCTGCTGTCCGACAAGC 147781 Query 302824 GAAATCATCTGCGAAATATT 302843 | |||| || |||||||| Sbjct 147782 GCTGTCATTTGAGAAATATT 147801 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | || ||||| |||||| | ||||||||| Sbjct 146753 AGAATTTCCTTGAGACGAGGCACACCAAGTGTGACGTT---CTTGGAAGACACACCAGCA 146809 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || |||||||||||||| || | || || | || |||||||| || ||||||| Sbjct 146810 AAATGGAAAGTATTCAGTGTCATCTGGGTGGCGGGTTCACCAATGGACTGAGCCGCAAGA 146869 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 146870 ACACCAACCATTTCACCAGG 146889 >seq66 Length=2244893 Score = 118 bits (130), Expect = 3e-21 Identities = 555/877 (63%), Gaps = 11/877 (1%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || || |||||| ||| ||||| || || |||||| || | ||||||||||| Sbjct 1020785 GTACTCAACGATCTCAGTGCAGAGGTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTT 1020844 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || ||||||||||| || || | ||| | || ||||| |||| || Sbjct 1020845 GCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGC 1020904 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || || || ||| || | | || || |||| |||| ||| Sbjct 1020905 CTCTAGGATGGAGTACCACAGCTTCTGAGCTCGGATAGTCTTGCGACCCTTGCCCTCCTT 1020964 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 ||| || ||| |||||| | | | || || || || || ||| || |||||||| Sbjct 1020965 CTCGTACTTCTCATACAGAGCCTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCA 1021024 Query 155870 CTTATCGGGGCAAAACAGCGACCAA---ATTTTATTACCGATTACACGCTCCATAAATAC 155926 | | |||||| | || | ||| | || || | | |||||| ||| || | Sbjct 1021025 TTCGTTGGGGCACATCAAAGTCCAGTCCAAGTTCTTCTCAA---CACGCTTCATGAACAG 1021081 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 |||| ||| | ||| ||| ||||| | || ||| || | |||||| || Sbjct 1021082 ATCAGGGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTT 1021141 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||| || || || | ||| || | ||| | || ||||| || || || ||||| Sbjct 1021142 CTTGCGGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAA 1021201 Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 |||| | |||| |||||||| || || || | ||||| || |||||||| | Sbjct 1021202 GGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCG 1021261 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 ||||| || || ||||| ||||| || || ||||| ||| ||| | || || | | Sbjct 1021262 AAGCATGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGC 1021321 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATT 156222 || | | || | | || || |||||||| | |||| || ||||| || ||| Sbjct 1021322 ACGGATACGGTGGACGTTCAGGCCGATACCACCAG-CCATCTTGGAAATCATGGCACATG 1021380 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282 ||||| ||| | | | ||||| ||||| || || | ||| | || |||| | Sbjct 1021381 TCTTTAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATG 1021440 Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAAT 156342 | | |||| | |||| || ||||||||||| || || || | ||||| |||| Sbjct 1021441 AGGACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGA 1021500 Query 156343 ACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATAC 156402 | || | ||||| | ||||||||| | ||||| || || || | Sbjct 1021501 ATTTGCTGGACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAACGC 1021560 Query 156403 AGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCA 156462 | || || | ||| ||| ||||| || ||||| |||||| ||||||| || Sbjct 1021561 CAACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGCTTCA 1021620 Query 156463 GAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 | || |||| || ||||| || || || ||||| || Sbjct 1021621 GGAGATATGACCGCTCCAGTGTCTTGAAGCCGAAGTA 1021657 >seq44 Length=3047126 Score = 102 bits (112), Expect = 2e-16 Identities = 140/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 251468 CCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAAC 251527 ||||| |||| | ||||||||||| ||||||||||||||| |||||||| ||||| | Sbjct 525591 CCTTGAGGAAGGACGCTGCACCGTGTGCAATCATACAATCACGTTCCATTTCTCCGAATC 525532 Query 251528 GAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGAC 251587 | ||||||||||| ||||| | |||||| | ||||| || || | | || ||||| Sbjct 525531 GGAGACCACCATCTCGAGCACGACCCTCCACTGGCTGCCGTGTCATGATCTGCACAGGAC 525472 Query 251588 CGATGGAGC---GGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATG 251644 | |||| ||| ||| ||| || | ||||| || ||| ||||||||| ||| Sbjct 525471 C--ACGAGCTCTGGC-ATGGATCTTGTCGTCCACCATGTGGCGGAGTCGCTGGTAGTATG 525415 Query 251645 CGGGACCGATGAA 251657 || || | ||| Sbjct 525414 TCGGTCCAAAGAA 525402 >seq2 Length=1230088 Score = 87.8 bits (96), Expect = 5e-12 Identities = 133/188 (71%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 251475 GAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGAC 251533 ||||| |||| ||||| | | ||||| ||||||||| |||||||| || | |||||||| Sbjct 943901 GAAGCTGAGAAGCACCATAGGCAATCAGACAATCACGTTCCATTTCTCCCAGACGAAGAC 943842 Query 251534 CACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGG 251593 |||| || || | | ||| |||| ||||| ||||| ||| | | | || ||| | Sbjct 943841 CACCGTCTCGCGATCGACCTTCGGTGGGCTGTCGAGTCAGAATGGCTCTGGGGCCGCGAG 943782 Query 251594 AGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGA 251653 || || ||| || | ||||| ||||| ||||| |||||| | || ||| Sbjct 943781 CACGAGAGTGCATCTTGTCTTGCACCATGTGCTTCAGACGTTGGTAGTAGATTGGGCCGT 943722 Query 251654 TGAAGATG 251661 |||||||| Sbjct 943721 TGAAGATG 943714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471815129646147