Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq35 132 6e-25
seq66 131 2e-24
seq99 120 4e-21
seq40 100 3e-15
seq1 91.5 2e-12
>seq35
Length=1329723
Score = 132 bits (146), Expect = 6e-25
Identities = 207/289 (72%), Gaps = 13/289 (4%)
Strand=Plus/Plus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|| ||||| ||| ||| | |||||| |||| ||||| |||||||| || | ||||
Sbjct 994388 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCTCTTC 994447
Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
|||||||| ||||||| ||| | || || ||| ||||| ||||||||||| |||||
Sbjct 994448 TTGAGCCAGAAGATGGAGGCAAAGGCT-CCGCTGAAGAAGATACCCTCGACGGCAGCAAA 994506
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCGC 869355
| | | || |||| |||||| | ||| |||||| | ||||||||| || ||
Sbjct 994507 GGCAACAAGGCGCTGAGCAAAG--GAAGAG----TCCTTGTCCTGGATCCACTTGATGGC 994560
Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 869415
|||||| ||||| || | | | || | || || |||||| ||||||| ||
Sbjct 994561 CCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTTGCG 994620
Query 869416 TTCGGCCG-GGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
| ||| | | |||||||| ||||||||||| || || || ||||||||
Sbjct 994621 CT-GGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCTC 994668
Score = 129 bits (142), Expect = 7e-24
Identities = 176/244 (72%), Gaps = 4/244 (2%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||||||||| || ||| |||||| |||||||||||||| | || |||||
Sbjct 994073 GCCTTCTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATG 994132
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808
|||||| | || ||||||| | |||||| ||| ||| || ||||||
Sbjct 994133 TTCTCCATGAAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCGTTGCCAAGAGCGA-- 994190
Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868
||||||| || ||||| |||||||| |||||||| ||| ||| |||||||||||| |
Sbjct 994191 CGAGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCCA 994250
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928
|| || || || | |||| ||| ||||||| |||||| |||||| || ||
Sbjct 994251 GCAGAGCACAGGGGAGAGCCTCGGTCAAGAACTCTTGCTCGATTCTGACGGCATCAGTGA 994310
Query 868929 TGAT 868932
||||
Sbjct 994311 TGAT 994314
>seq66
Length=2244893
Score = 131 bits (144), Expect = 2e-24
Identities = 186/259 (72%), Gaps = 2/259 (1%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||||||||| | || |||| ||| ||||| || |||||||| | || ||||||||
Sbjct 1021226 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGA 1021285
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||||||||| || | ||| | ||| | || || | ||| || | |||
Sbjct 1021286 GGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCC 1021345
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCCT 1630243
||| || || ||| |||||| || | || || ||| || || ||||||||||| ||||
Sbjct 1021346 GATACCACCAGCCATCTTGGAAATCATGGCACA-TGTCTTTAGAGTGTCGTAGATACCCT 1021404
Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303
| || |||| ||||||||||||| || ||||| || || || | || | || |
Sbjct 1021405 CAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTAC 1021464
Query 1630304 CGGCGTTGAAGAGCGTGGG 1630322
| ||||||||||| |||||
Sbjct 1021465 CAGCGTTGAAGAGGGTGGG 1021483
Score = 123 bits (136), Expect = 3e-22
Identities = 89/103 (86%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
|||| | ||| || ||||||||||| ||||| | || |||||| |||| ||||||||||
Sbjct 939059 CCAATTTCCTTGATATCAAGCCTCTTCTCGACGTCGGCTGCAAGACTGTAGCCAACATGA 939000
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
||||||||||||| |||||||||||||||||||| || |||||
Sbjct 938999 TCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACTTTCAACAT 938957
Score = 87.8 bits (96), Expect = 2e-11
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524
|||| || ||| || ||||| || || ||| ||| ||||||||||||||||| ||
Sbjct 1021090 TCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGA 1021149
Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584
|||| || | || | | ||||||||||| ||||| |||||| ||||||||| ||
Sbjct 1021150 GGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAG 1021209
Query 1628585 TGCGCTTGCCGCCGCC 1628600
||||||| ||| ||
Sbjct 1021210 GGCGCTTGTTGCCACC 1021225
>seq99
Length=2041487
Score = 120 bits (132), Expect = 4e-21
Identities = 304/454 (67%), Gaps = 10/454 (2%)
Strand=Plus/Plus
Query 1852175 TTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCC 1852234
|| |||||||| | || ||||||||||| |||||||| |||| ||||||||| ||| ||
Sbjct 239051 TTACGCTGGTCAAGTCCTCCAAACTGGGCATCGACGTCCAGGTACTGCTCGTCCAGGACC 239110
Query 1852235 TGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTG-CGGTCCATCTTGACCACCTG 1852293
|||| | ||||||||||| | ||| ||| ||| | || | |||||| ||||
Sbjct 239111 TGCAGAATCGGGTAGAGCAGGCCTGACAGCGGCGCATTGTCCGT-CTGCTTGACAACCTC 239169
Query 1852294 AGCGGCGGCC--TTTTGCGCCGTGC-CGGTGCGCACGTGCGCCGCGAGTCGGTAGAGGTC 1852350
||| ||||| || ||| ||||| ||| | | | || || || ||||| |||
Sbjct 239170 GGCGCCGGCCCTCTTGGCGTCGTGCTCGGAG---ATGACCGACGACAGCTTGTAGACGTC 239226
Query 1852351 GAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAG 1852410
| ||| || || ||||||| | |||| | ||||||| ||| | | | |
Sbjct 239227 CATGATGTACTCGGGGCTCTTCTGGTACGAGCTGCCCTGGACAAACTTGAG-CTTCTCGG 239285
Query 1852411 CGG-CACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGT 1852469
|| |||||||| | || || ||||| ||||| | || ||| | ||
Sbjct 239286 TGGACACGCCGACGGCCTTGAAGATGGCGGTGATGACGAAGCGGTAGTATTCAACTCGCA 239345
Query 1852470 GTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGA 1852529
| |||||||| || |||| || |||||||||| | | || | |||||| | |
Sbjct 239346 GCTCGACCAGCTCGATGGGCGCTTTCAGGTTGTCGAGGAAGCCATGGATGTCGGCGAGCA 239405
Query 1852530 GGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGATGGGCACAAAGT 1852589
||||| |||| | |||||||| ||| | | ||| | ||||| | |||||||||||
Sbjct 239406 GGATCGTGACGTGGCAGCCGGCGGCCAGATACTGGGCGATTTTGATGGCGGGCACAAAGT 239465
Query 1852590 AGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCC 1852623
|||| ||| ||| ||| || | || |||||
Sbjct 239466 AGCCGCAGTGAGGGCGGCCGGTTGTGGCGGTGCC 239499
>seq40
Length=990422
Score = 100 bits (110), Expect = 3e-15
Identities = 242/360 (67%), Gaps = 10/360 (3%)
Strand=Plus/Minus
Query 92616 GTGAGGGCCTCCTGCACCTGGAAGCGGTCG-GAAAACATGTCGACGATGCGCGGGATCTT 92674
|| ||| |||||| | ||| | || | || | |||||| ||| | |||||||| | |||
Sbjct 556039 GTCAGGCGCTCCTGGATCTGCA-GCCGCCGCGCAAACATCTCGGCTATGCGCGGCAGCTT 555981
Query 92675 GCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCCTTGCCCATAAAGGG 92734
||| | ||| || | | | || | |||||| | ||| |||||||||||||||
Sbjct 555980 GCTAATGCCAATCACGGCGTTGTTTGGGATGTAGCCAATGTGCATCTTGCCCATAAAGGG 555921
Query 92735 CAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACGATCACCATCTCGCC 92794
|| ||| ||||||||||||| |||| | | ||| | ||| || |||||||| |||
Sbjct 555920 CACCAGGTGGTGCTCGCACAGGGAGTAGACGTCAATGTCCTTGACAATCACCATTTCGTT 555861
Query 92795 CGAGGCCTC--GGCAAAGAGCG-CGTCGCCGATGGCCTCGGCCAGCGTCATGC-GGTGGC 92850
| |||| || ||| ||| ||| | | ||| || | ||| | | ||| ||
Sbjct 555860 GTGGCCCTCTTGGAAAATGGCGCCGTTGACAATGTCC----GAAATGTCCTCCTGGTAGC 555805
Query 92851 CGCGCGTGCGCTCCACCATGGCCTTGGCCACGCGCATCGGCGTGTCCAGGAGGCCCTCGC 92910
| || |||| ||||||||| || |||| ||||||| | |||||||||||||
Sbjct 555804 CCTTTGTAAAGTCCAGCATGGCCTTTGCGTAGCGCTGCGGCGTGGCGAGGAGGCCCTCGC 555745
Query 92911 GCCGCACGTCCTCGCCCAGGCAGGCCAGCAGCGTCCTCGTGGCGTCGGCCATGCGCGCCA 92970
| |||||||| | || | ||||| || ||| ||| | ||||||| |||
Sbjct 555744 GGTTGGGATCCTCGCCGACACACTCTAGCAGTGTTCTCACAGCGCCCTTCATGCGCTCCA 555685
>seq1
Length=3480556
Score = 91.5 bits (100), Expect = 2e-12
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104
||||||| || |||||||| || |||| || ||| |||||||| | || || ||||
Sbjct 2678826 AGGACAGTATTGGCGGCACAGTTTCGTGTGTCATTCGAAACGTGCCAACTGGACTTGGCG 2678767
Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164
| ||| ||| |||| | ||||| | || || |||| |||||| |||||||| |
Sbjct 2678766 AACCGGTGTTTTCCAAGTTGGAGGCAACACTTGCTCACGGAATGCTGAGCATCCCGGCAA 2678707
Query 19165 CCAAGGGATTCGAGATTGGC 19184
| |||||||||||||| |||
Sbjct 2678706 CAAAGGGATTCGAGATCGGC 2678687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107128449526527
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |