Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq35 132 6e-25 seq66 131 2e-24 seq99 120 4e-21 seq40 100 3e-15 seq1 91.5 2e-12 >seq35 Length=1329723 Score = 132 bits (146), Expect = 6e-25 Identities = 207/289 (72%), Gaps = 13/289 (4%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| ||| ||| | |||||| |||| ||||| |||||||| || | |||| Sbjct 994388 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCTCTTC 994447 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 |||||||| ||||||| ||| | || || ||| ||||| ||||||||||| ||||| Sbjct 994448 TTGAGCCAGAAGATGGAGGCAAAGGCT-CCGCTGAAGAAGATACCCTCGACGGCAGCAAA 994506 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCGC 869355 | | | || |||| |||||| | ||| |||||| | ||||||||| || || Sbjct 994507 GGCAACAAGGCGCTGAGCAAAG--GAAGAG----TCCTTGTCCTGGATCCACTTGATGGC 994560 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 869415 |||||| ||||| || | | | || | || || |||||| ||||||| || Sbjct 994561 CCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTTGCG 994620 Query 869416 TTCGGCCG-GGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| | | |||||||| ||||||||||| || || || |||||||| Sbjct 994621 CT-GGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCTC 994668 Score = 129 bits (142), Expect = 7e-24 Identities = 176/244 (72%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||||||||| || ||| |||||| |||||||||||||| | || ||||| Sbjct 994073 GCCTTCTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATG 994132 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | || ||||||| | |||||| ||| ||| || |||||| Sbjct 994133 TTCTCCATGAAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCGTTGCCAAGAGCGA-- 994190 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 ||||||| || ||||| |||||||| |||||||| ||| ||| |||||||||||| | Sbjct 994191 CGAGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCCA 994250 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 || || || || | |||| ||| ||||||| |||||| |||||| || || Sbjct 994251 GCAGAGCACAGGGGAGAGCCTCGGTCAAGAACTCTTGCTCGATTCTGACGGCATCAGTGA 994310 Query 868929 TGAT 868932 |||| Sbjct 994311 TGAT 994314 >seq66 Length=2244893 Score = 131 bits (144), Expect = 2e-24 Identities = 186/259 (72%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| | || |||| ||| ||||| || |||||||| | || |||||||| Sbjct 1021226 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGA 1021285 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| || | ||| | ||| | || || | ||| || | ||| Sbjct 1021286 GGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCC 1021345 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCCT 1630243 ||| || || ||| |||||| || | || || ||| || || ||||||||||| |||| Sbjct 1021346 GATACCACCAGCCATCTTGGAAATCATGGCACA-TGTCTTTAGAGTGTCGTAGATACCCT 1021404 Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303 | || |||| ||||||||||||| || ||||| || || || | || | || | Sbjct 1021405 CAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTAC 1021464 Query 1630304 CGGCGTTGAAGAGCGTGGG 1630322 | ||||||||||| ||||| Sbjct 1021465 CAGCGTTGAAGAGGGTGGG 1021483 Score = 123 bits (136), Expect = 3e-22 Identities = 89/103 (86%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||| | ||| || ||||||||||| ||||| | || |||||| |||| |||||||||| Sbjct 939059 CCAATTTCCTTGATATCAAGCCTCTTCTCGACGTCGGCTGCAAGACTGTAGCCAACATGA 939000 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||| |||||||||||||||||||| || ||||| Sbjct 938999 TCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACTTTCAACAT 938957 Score = 87.8 bits (96), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||| || ||| || ||||| || || ||| ||| ||||||||||||||||| || Sbjct 1021090 TCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGCGGA 1021149 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 |||| || | || | | ||||||||||| ||||| |||||| ||||||||| || Sbjct 1021150 GGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAG 1021209 Query 1628585 TGCGCTTGCCGCCGCC 1628600 ||||||| ||| || Sbjct 1021210 GGCGCTTGTTGCCACC 1021225 >seq99 Length=2041487 Score = 120 bits (132), Expect = 4e-21 Identities = 304/454 (67%), Gaps = 10/454 (2%) Strand=Plus/Plus Query 1852175 TTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCC 1852234 || |||||||| | || ||||||||||| |||||||| |||| ||||||||| ||| || Sbjct 239051 TTACGCTGGTCAAGTCCTCCAAACTGGGCATCGACGTCCAGGTACTGCTCGTCCAGGACC 239110 Query 1852235 TGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTG-CGGTCCATCTTGACCACCTG 1852293 |||| | ||||||||||| | ||| ||| ||| | || | |||||| |||| Sbjct 239111 TGCAGAATCGGGTAGAGCAGGCCTGACAGCGGCGCATTGTCCGT-CTGCTTGACAACCTC 239169 Query 1852294 AGCGGCGGCC--TTTTGCGCCGTGC-CGGTGCGCACGTGCGCCGCGAGTCGGTAGAGGTC 1852350 ||| ||||| || ||| ||||| ||| | | | || || || ||||| ||| Sbjct 239170 GGCGCCGGCCCTCTTGGCGTCGTGCTCGGAG---ATGACCGACGACAGCTTGTAGACGTC 239226 Query 1852351 GAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAG 1852410 | ||| || || ||||||| | |||| | ||||||| ||| | | | | Sbjct 239227 CATGATGTACTCGGGGCTCTTCTGGTACGAGCTGCCCTGGACAAACTTGAG-CTTCTCGG 239285 Query 1852411 CGG-CACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGT 1852469 || |||||||| | || || ||||| ||||| | || ||| | || Sbjct 239286 TGGACACGCCGACGGCCTTGAAGATGGCGGTGATGACGAAGCGGTAGTATTCAACTCGCA 239345 Query 1852470 GTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGA 1852529 | |||||||| || |||| || |||||||||| | | || | |||||| | | Sbjct 239346 GCTCGACCAGCTCGATGGGCGCTTTCAGGTTGTCGAGGAAGCCATGGATGTCGGCGAGCA 239405 Query 1852530 GGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGATGGGCACAAAGT 1852589 ||||| |||| | |||||||| ||| | | ||| | ||||| | ||||||||||| Sbjct 239406 GGATCGTGACGTGGCAGCCGGCGGCCAGATACTGGGCGATTTTGATGGCGGGCACAAAGT 239465 Query 1852590 AGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCC 1852623 |||| ||| ||| ||| || | || ||||| Sbjct 239466 AGCCGCAGTGAGGGCGGCCGGTTGTGGCGGTGCC 239499 >seq40 Length=990422 Score = 100 bits (110), Expect = 3e-15 Identities = 242/360 (67%), Gaps = 10/360 (3%) Strand=Plus/Minus Query 92616 GTGAGGGCCTCCTGCACCTGGAAGCGGTCG-GAAAACATGTCGACGATGCGCGGGATCTT 92674 || ||| |||||| | ||| | || | || | |||||| ||| | |||||||| | ||| Sbjct 556039 GTCAGGCGCTCCTGGATCTGCA-GCCGCCGCGCAAACATCTCGGCTATGCGCGGCAGCTT 555981 Query 92675 GCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCCTTGCCCATAAAGGG 92734 ||| | ||| || | | | || | |||||| | ||| ||||||||||||||| Sbjct 555980 GCTAATGCCAATCACGGCGTTGTTTGGGATGTAGCCAATGTGCATCTTGCCCATAAAGGG 555921 Query 92735 CAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACGATCACCATCTCGCC 92794 || ||| ||||||||||||| |||| | | ||| | ||| || |||||||| ||| Sbjct 555920 CACCAGGTGGTGCTCGCACAGGGAGTAGACGTCAATGTCCTTGACAATCACCATTTCGTT 555861 Query 92795 CGAGGCCTC--GGCAAAGAGCG-CGTCGCCGATGGCCTCGGCCAGCGTCATGC-GGTGGC 92850 | |||| || ||| ||| ||| | | ||| || | ||| | | ||| || Sbjct 555860 GTGGCCCTCTTGGAAAATGGCGCCGTTGACAATGTCC----GAAATGTCCTCCTGGTAGC 555805 Query 92851 CGCGCGTGCGCTCCACCATGGCCTTGGCCACGCGCATCGGCGTGTCCAGGAGGCCCTCGC 92910 | || |||| ||||||||| || |||| ||||||| | ||||||||||||| Sbjct 555804 CCTTTGTAAAGTCCAGCATGGCCTTTGCGTAGCGCTGCGGCGTGGCGAGGAGGCCCTCGC 555745 Query 92911 GCCGCACGTCCTCGCCCAGGCAGGCCAGCAGCGTCCTCGTGGCGTCGGCCATGCGCGCCA 92970 | |||||||| | || | ||||| || ||| ||| | ||||||| ||| Sbjct 555744 GGTTGGGATCCTCGCCGACACACTCTAGCAGTGTTCTCACAGCGCCCTTCATGCGCTCCA 555685 >seq1 Length=3480556 Score = 91.5 bits (100), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104 ||||||| || |||||||| || |||| || ||| |||||||| | || || |||| Sbjct 2678826 AGGACAGTATTGGCGGCACAGTTTCGTGTGTCATTCGAAACGTGCCAACTGGACTTGGCG 2678767 Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164 | ||| ||| |||| | ||||| | || || |||| |||||| |||||||| | Sbjct 2678766 AACCGGTGTTTTCCAAGTTGGAGGCAACACTTGCTCACGGAATGCTGAGCATCCCGGCAA 2678707 Query 19165 CCAAGGGATTCGAGATTGGC 19184 | |||||||||||||| ||| Sbjct 2678706 CAAAGGGATTCGAGATCGGC 2678687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107128449526527