Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq35 168 1e-35 seq66 114 2e-19 seq44 107 3e-17 seq99 104 4e-16 >seq35 Length=1329723 Score = 168 bits (186), Expect = 1e-35 Identities = 237/330 (72%), Gaps = 11/330 (3%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| ||| ||| | |||||| ||| ||||| |||||||| || | |||| Sbjct 994388 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCTCTTC 994447 Query 794401 TTGAGCCAAAAGATGGCA-CAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 |||||||| ||||||| || | || | | ||| ||||| ||||||||||| ||||| Sbjct 994448 TTGAGCCAGAAGATGGAGGCAAAGGCTCCGCT-GAAGAAGATACCCTCGACGGCAGCAAA 994506 Query 794460 GCCGACGAGCCGCTCGGCAAA---AGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 | | || || |||| ||||| || |||| | ||| ||||||||| || || Sbjct 994507 GGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTG------GATCCACTTGATGGC 994560 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576 ||| || ||||| || | | | || | || || |||||| ||||||| || Sbjct 994561 CCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTTGCG 994620 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 || | | ||||||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct 994621 CTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 994680 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || ||||||||| || || ||||| Sbjct 994681 CTCCATCATGATCTGGAAACCGTAGAAGCA 994710 Score = 129 bits (142), Expect = 9e-24 Identities = 181/252 (72%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| |||||||| || ||| |||||| |||||||||||||| | | Sbjct 994065 TGACACCGGCCTTCTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCA 994124 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC-- 794008 | ||||| |||||| | || ||||||| | | ||| ||||||| || Sbjct 994125 GGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCGTTGCCAA 994184 Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 |||||||| ||||| || ||||| || || ||||||||||| ||| |||| |||||| Sbjct 994185 GAGCGACG--AGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTT 994242 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||||| | || || ||| || | |||| | | ||||||| |||||| |||||| Sbjct 994243 CATGCCCAGCAGAGCACAGGGGAGAGCCTCGGTCAAGAACTCTTGCTCGATTCTGACGGC 994302 Query 794129 CTCGATGATGAT 794140 || ||||||| Sbjct 994303 ATCAGTGATGAT 994314 >seq66 Length=2244893 Score = 114 bits (126), Expect = 2e-19 Identities = 180/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || | || |||| ||| ||||| || |||||||| | | |||||||| Sbjct 1021226 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGA 1021285 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||||| || | ||| | ||||| || || | ||| || | ||| Sbjct 1021286 GGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCC 1021345 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || ||| |||||| || | || || | || || || |||||||| ||||| Sbjct 1021346 GATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTC 1021405 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || |||| |||||||||||| ||| ||||| || || || | | | || || Sbjct 1021406 AATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTACC 1021465 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 || |||||||| ||||| Sbjct 1021466 AGCGTTGAAGAGGGTGGG 1021483 Score = 105 bits (116), Expect = 1e-16 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||| | ||| || |||||||| || ||||| | || |||||||| || |||||| | | Sbjct 939059 CCAATTTCCTTGATATCAAGCCTCTTCTCGACGTCGGCTGCAAGACTGTAGCCAACATGA 939000 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 ||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 938999 TCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACTTTCAACAT 938957 >seq44 Length=3047126 Score = 107 bits (118), Expect = 3e-17 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| ||||||||||| ||||| |||||||||||| |||||||||| || ||| Sbjct 3000621 GTACTTGGTAACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGTTCACCCGGCAG 3000562 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 |||||| || |||| ||||||||||| |||| Sbjct 3000561 GATCAGTCGGACGGATGTCTGGATCTCTCGGG 3000530 >seq99 Length=2041487 Score = 104 bits (114), Expect = 4e-16 Identities = 305/461 (66%), Gaps = 12/461 (3%) Strand=Plus/Plus Query 2411512 AAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCG 2411571 |||| || |||||||| | || ||||||||||| |||||||| |||| ||||||||| Sbjct 239045 AAGAGTTTACGCTGGTCAAGTCCTCCAAACTGGGCATCGACGTCCAGGTACTGCTCGTCC 239104 Query 2411572 AGGGCCTGCATGAGCGGGTAGACGAGGTTGCTG--AGCGGCGGGTTG-CGGTCCATCTTG 2411628 ||| |||||| | |||||||| ||| ||| ||||||| ||| | || | |||| Sbjct 239105 AGGACCTGCAGAATCGGGTAGAGCAGG--CCTGACAGCGGCGCATTGTCCGT-CTGCTTG 239161 Query 2411629 ACCACCTGGGCGGCGGCC--TTTTGCGCCGTGCCGACGGTCACGCGCGCCGTCAGGCGCA 2411686 || |||| |||| ||||| || ||| ||||| ||| | | || || ||| Sbjct 239162 ACAACCTCGGCGCCGGCCCTCTTGGCGTCGTGC--TCGGAGATGACCGACGACAGCTTGT 239219 Query 2411687 AGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAAATTCGAGAC 2411746 ||| ||| | |||| ||| || | |||||| |||||| | ||||| | ||| Sbjct 239220 AGACGTCCATGATGTACTCGGGGCTCTTCTGGTACGAGCTGCCCTGGACAAACTTGAGCT 239279 Query 2411747 GATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGC 2411806 || | ||||| | | || || ||||| ||||| | || ||| | Sbjct 239280 TCTCGGTGGACACGCCGACGGCCTTGAAGATGGCGGTGATGACGAAGCGGTAGTATTCAA 239339 Query 2411807 ACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGG 2411866 || ||||||| || || |||| || ||||||||| | | || | ||||| Sbjct 239340 CTCGCAGCTCGACCAGCTCGATGGGCGCTTTCAGGTTGTCGAGGAAGCCATGGATGTCGG 239399 Query 2411867 CAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCA 2411926 | | |||||| | || | || ||||| ||| | | ||| | ||| | | ||||| Sbjct 239400 CGAGCAGGATCGTGACGTGGCAGCCGGCGGCCAGATACTGGGCGATTTTGATGGCGGGCA 239459 Query 2411927 CAAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGCGGTGCC 2411966 |||||||||| ||| || || ||| || | |||||||| Sbjct 239460 CAAAGTAGCCGCAG-TGAGGGCGGCCGGTTGTGGCGGTGCC 239499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916232464932509