Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq35 168 1e-35
seq66 114 2e-19
seq44 107 3e-17
seq99 104 4e-16
>seq35
Length=1329723
Score = 168 bits (186), Expect = 1e-35
Identities = 237/330 (72%), Gaps = 11/330 (3%)
Strand=Plus/Plus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|| ||||| ||| ||| | |||||| ||| ||||| |||||||| || | ||||
Sbjct 994388 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCTCTCTTC 994447
Query 794401 TTGAGCCAAAAGATGGCA-CAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
|||||||| ||||||| || | || | | ||| ||||| ||||||||||| |||||
Sbjct 994448 TTGAGCCAGAAGATGGAGGCAAAGGCTCCGCT-GAAGAAGATACCCTCGACGGCAGCAAA 994506
Query 794460 GCCGACGAGCCGCTCGGCAAA---AGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516
| | || || |||| ||||| || |||| | ||| ||||||||| || ||
Sbjct 994507 GGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTG------GATCCACTTGATGGC 994560
Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576
||| || ||||| || | | | || | || || |||||| ||||||| ||
Sbjct 994561 CCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTTGCG 994620
Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636
|| | | ||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 994621 CTGGCTGTGCTCCTTGACGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 994680
Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
|| || ||||||||| || || |||||
Sbjct 994681 CTCCATCATGATCTGGAAACCGTAGAAGCA 994710
Score = 129 bits (142), Expect = 9e-24
Identities = 181/252 (72%), Gaps = 4/252 (2%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| |||||||| || ||| |||||| |||||||||||||| | |
Sbjct 994065 TGACACCGGCCTTCTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCA 994124
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC-- 794008
| ||||| |||||| | || ||||||| | | ||| ||||||| ||
Sbjct 994125 GGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCGTTGCCAA 994184
Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068
|||||||| ||||| || ||||| || || ||||||||||| ||| |||| ||||||
Sbjct 994185 GAGCGACG--AGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTGGCGTT 994242
Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128
|||||| | || || ||| || | |||| | | ||||||| |||||| ||||||
Sbjct 994243 CATGCCCAGCAGAGCACAGGGGAGAGCCTCGGTCAAGAACTCTTGCTCGATTCTGACGGC 994302
Query 794129 CTCGATGATGAT 794140
|| |||||||
Sbjct 994303 ATCAGTGATGAT 994314
>seq66
Length=2244893
Score = 114 bits (126), Expect = 2e-19
Identities = 180/258 (70%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||||||||| || | || |||| ||| ||||| || |||||||| | | ||||||||
Sbjct 1021226 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGGATGATACCGTTGGA 1021285
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||||||||| || | ||| | ||||| || || | ||| || | |||
Sbjct 1021286 GGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGATACGGTGGACGTTCAGGCC 1021345
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||| || || ||| |||||| || | || || | || || || |||||||| |||||
Sbjct 1021346 GATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTTAGAGTGTCGTAGATACCCTC 1021405
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
|| |||| |||||||||||| ||| ||||| || || || | | | || ||
Sbjct 1021406 AATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGAGCTTGTGGGGTACC 1021465
Query 2073780 GGCATTGAAGAGCGTGGG 2073797
|| |||||||| |||||
Sbjct 1021466 AGCGTTGAAGAGGGTGGG 1021483
Score = 105 bits (116), Expect = 1e-16
Identities = 85/103 (83%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
|||| | ||| || |||||||| || ||||| | || |||||||| || |||||| | |
Sbjct 939059 CCAATTTCCTTGATATCAAGCCTCTTCTCGACGTCGGCTGCAAGACTGTAGCCAACATGA 939000
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753
||||||||||||| |||||||| ||||||||||| || |||||
Sbjct 938999 TCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACTTTCAACAT 938957
>seq44
Length=3047126
Score = 107 bits (118), Expect = 3e-17
Identities = 79/92 (86%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||| ||||||||||| ||||| |||||||||||| |||||||||| || |||
Sbjct 3000621 GTACTTGGTAACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGTTCACCCGGCAG 3000562
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562
|||||| || |||| ||||||||||| ||||
Sbjct 3000561 GATCAGTCGGACGGATGTCTGGATCTCTCGGG 3000530
>seq99
Length=2041487
Score = 104 bits (114), Expect = 4e-16
Identities = 305/461 (66%), Gaps = 12/461 (3%)
Strand=Plus/Plus
Query 2411512 AAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCG 2411571
|||| || |||||||| | || ||||||||||| |||||||| |||| |||||||||
Sbjct 239045 AAGAGTTTACGCTGGTCAAGTCCTCCAAACTGGGCATCGACGTCCAGGTACTGCTCGTCC 239104
Query 2411572 AGGGCCTGCATGAGCGGGTAGACGAGGTTGCTG--AGCGGCGGGTTG-CGGTCCATCTTG 2411628
||| |||||| | |||||||| ||| ||| ||||||| ||| | || | ||||
Sbjct 239105 AGGACCTGCAGAATCGGGTAGAGCAGG--CCTGACAGCGGCGCATTGTCCGT-CTGCTTG 239161
Query 2411629 ACCACCTGGGCGGCGGCC--TTTTGCGCCGTGCCGACGGTCACGCGCGCCGTCAGGCGCA 2411686
|| |||| |||| ||||| || ||| ||||| ||| | | || || |||
Sbjct 239162 ACAACCTCGGCGCCGGCCCTCTTGGCGTCGTGC--TCGGAGATGACCGACGACAGCTTGT 239219
Query 2411687 AGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAAATTCGAGAC 2411746
||| ||| | |||| ||| || | |||||| |||||| | ||||| | |||
Sbjct 239220 AGACGTCCATGATGTACTCGGGGCTCTTCTGGTACGAGCTGCCCTGGACAAACTTGAGCT 239279
Query 2411747 GATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGC 2411806
|| | ||||| | | || || ||||| ||||| | || ||| |
Sbjct 239280 TCTCGGTGGACACGCCGACGGCCTTGAAGATGGCGGTGATGACGAAGCGGTAGTATTCAA 239339
Query 2411807 ACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGG 2411866
|| ||||||| || || |||| || ||||||||| | | || | |||||
Sbjct 239340 CTCGCAGCTCGACCAGCTCGATGGGCGCTTTCAGGTTGTCGAGGAAGCCATGGATGTCGG 239399
Query 2411867 CAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCA 2411926
| | |||||| | || | || ||||| ||| | | ||| | ||| | | |||||
Sbjct 239400 CGAGCAGGATCGTGACGTGGCAGCCGGCGGCCAGATACTGGGCGATTTTGATGGCGGGCA 239459
Query 2411927 CAAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGCGGTGCC 2411966
|||||||||| ||| || || ||| || | ||||||||
Sbjct 239460 CAAAGTAGCCGCAG-TGAGGGCGGCCGGTTGTGGCGGTGCC 239499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916232464932509
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |