Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq42 98.7 7e-15 seq121 87.8 1e-11 >seq42 Length=797865 Score = 98.7 bits (108), Expect = 7e-15 Identities = 107/141 (76%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 131166 AAATAAAAATTGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTA 131225 |||| ||| |||||||||| || || ||||| |||||||| || ||||||| || || | Sbjct 76261 AAATTAAAGTTGTAGTAGCAACCATTGCATTCGGTATGGGAATCGATAAACCAGACGTCA 76320 Query 131226 GAGTTGTTATTCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTA 131285 || ||||||| || | || ||| |||| | ||||| ||||||||||||| ||| Sbjct 76321 GATTTGTTATGCACCATGGCATTCCGAAGAGCTTAGAAGGCTATTATCAAGAAACTGGCC 76380 Query 131286 GAGCAGGTCGTGATGGAGAAA 131306 | || || || ||||| |||| Sbjct 76381 GTGCGGGCCGAGATGG-GAAA 76400 >seq121 Length=402543 Score = 87.8 bits (96), Expect = 1e-11 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 |||||||||||||| | ||||| |||||||||||| ||||| |||| ||| | || || Sbjct 147636 GAATTTTTCTTCCACGCCATGGCCGGTCGTGAAGGTCTTATTGATACCGCTGTCAAGACA 147577 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGAT 435240 || || |||||||| ||||| ||| || ||||| || |||||| Sbjct 147576 GCCGAGACTGGTTACATTCAGAGACGTCTCGTCAAAGCTCTCGAAGAT 147529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740623968453606