Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq42 98.7 7e-15
seq121 87.8 1e-11
>seq42
Length=797865
Score = 98.7 bits (108), Expect = 7e-15
Identities = 107/141 (76%), Gaps = 1/141 (1%)
Strand=Plus/Plus
Query 131166 AAATAAAAATTGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTA 131225
|||| ||| |||||||||| || || ||||| |||||||| || ||||||| || || |
Sbjct 76261 AAATTAAAGTTGTAGTAGCAACCATTGCATTCGGTATGGGAATCGATAAACCAGACGTCA 76320
Query 131226 GAGTTGTTATTCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTA 131285
|| ||||||| || | || ||| |||| | ||||| ||||||||||||| |||
Sbjct 76321 GATTTGTTATGCACCATGGCATTCCGAAGAGCTTAGAAGGCTATTATCAAGAAACTGGCC 76380
Query 131286 GAGCAGGTCGTGATGGAGAAA 131306
| || || || ||||| ||||
Sbjct 76381 GTGCGGGCCGAGATGG-GAAA 76400
>seq121
Length=402543
Score = 87.8 bits (96), Expect = 1e-11
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192
|||||||||||||| | ||||| |||||||||||| ||||| |||| ||| | || ||
Sbjct 147636 GAATTTTTCTTCCACGCCATGGCCGGTCGTGAAGGTCTTATTGATACCGCTGTCAAGACA 147577
Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGAT 435240
|| || |||||||| ||||| ||| || ||||| || ||||||
Sbjct 147576 GCCGAGACTGGTTACATTCAGAGACGTCTCGTCAAAGCTCTCGAAGAT 147529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740623968453606
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |