Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq66 199 4e-46 seq35 165 8e-36 seq44 145 7e-30 seq42 107 2e-18 >seq66 Length=2244893 Score = 199 bits (220), Expect = 4e-46 Identities = 1113/1756 (63%), Gaps = 49/1756 (3%) Strand=Plus/Plus Query 148047 TTAAACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGT 148103 || || |||||| ||| |||||||| || |||||||| || | ||| | | ||| | Sbjct 1019961 TTCAAGGACTGGGACTGATCAATGAAAGCACCACGGTCGGCTGACATCTGGACGATGTGG 1020020 Query 148104 CGCTTTATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCG 148163 |||| |||||||| | ||||||||||| |||||| | |||||||| | Sbjct 1020021 CGCTGAGAG---ATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGAATGTTG 1020077 Query 148164 TCGATGCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTAT 148223 ||| ||| | || ||| | |||| || | || ||| | || | | Sbjct 1020078 GGAATGTTCTGGATAGAACCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCAG 1020137 Query 148224 AGGTTGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCG 148283 ||| |||| || || | || || | | || || ||||| |||||||| || Sbjct 1020138 AGGCCAGTATCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCA 1020197 Query 148284 AGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAA 148343 || || || ||| | || | |||| || | || || || | || |||||||||| Sbjct 1020198 AGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGCCCAGG 1020257 Query 148344 ATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGA 148403 ||||| | || | || ||||||||| || || |||| |||||| | |||| | Sbjct 1020258 ATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATACCGTGC 1020317 Query 148404 TTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCAC 148463 | || || | ||| || | |||| ||||| || | || | || | |||| Sbjct 1020318 TCCTTAATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGTGGGCTTGACATCCCAC 1020377 Query 148464 ATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCG 148523 | ||| |||| |||||||| ||||| |||| | | || || || || Sbjct 1020378 AAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCATAAGGACCC 1020437 Query 148524 TGCGCCGCCGCCAGTTCGC-AGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAAT 148582 | | || | || || | |||||||| || ||| ||| || ||||| || Sbjct 1020438 TCGATCTTGGCAATCTCCATAGAT-GCCTCGAGGGCAGCGTGGTAGATGGTCTCAAAGAT 1020496 Query 148583 TTGCCTGTTGAGCAGCGCCGCCGACTCGCT-TTCGTACGGCATACGCAGCCGCACAAACG 148641 |||| |||| | | ||| | | | |||| | || | |||||| | || | Sbjct 1020497 TTGCTTGTTCAACT-CGCGAGCTTCGGGTGATTCGAAAGGAAGACGCAGAGCGAGGAAAG 1020555 Query 148642 CGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCG 148701 |||| ||||| ||||| || || || |||||||| ||||| |||| | ||| | Sbjct 1020556 CGTCAGCAAGACCCTGAACACCAACACCAATGGGTCGGTGGCGGCTGTTACTGTTGCGAG 1020615 Query 148702 CGCTCTCGAGCGGA-TAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACC 148760 | ||| || ||| |||| ||| |||||||| || || || || || |||||| Sbjct 1020616 C-CTCCTGAACGGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACAACCACC 1020674 Query 148761 TTTGTAATTCTGCGCAGCAATTCAAAATCGTA-----CTT-GTCATCTACGATGCATCGG 148814 || |||| | | ||| | ||| || || ||| || || ||| || || Sbjct 1020675 TTGGTAACATCGTGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTATAGTCGA--CAAAGG 1020732 Query 148815 TTCACGGCGAT----AGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTC 148870 || || || |||||| | ||||| || || ||| || ||||| |||||| Sbjct 1020733 --CAGGGAGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTC 1020790 Query 148871 TACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTT 148930 |||||||| | ||| || ||| || | ||| |||| |||||| || |||||||| Sbjct 1020791 AACGATCTCAGTGCAGAGGTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTT 1020850 Query 148931 GCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCAC 148990 || |||||| || |||||||| ||||| | || ||||| || ||| | || | Sbjct 1020851 GCGGTTGCAGGCATCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCTAG 1020910 Query 148991 TATGAACCGATGCAGGTCCTGCGCGCGCA----CTTGCTGCTCGTAGCGACCCTCCTGCT 149046 ||| | ||| | ||| || || | ||||| | | | ||||||| || Sbjct 1020911 GATGGAGTACCACAGCTTCTGAGCTCGGATAGTCTTGCGACCCTTG----CCCTCCTTCT 1020966 Query 149047 CGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACT 149106 |||| |||||| |||||| | ||||| ||||| || | || || ||||| | Sbjct 1020967 CGTACTTCTCATACAGAGCCTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCATT 1021026 Query 149107 TGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGG 149166 || |||||||| | | ||| | || | | || |||||||| |||||||| | Sbjct 1021027 CGTTGGGGCACATCAAAGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAG 1021086 Query 149167 GCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGC 149226 | | |||||| ||| | ||||| || || | ||||| ||| ||| || Sbjct 1021087 GGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGC 1021146 Query 149227 GCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGC 149286 | |||| || | || | || |||||||| ||||| | ||| | || | || | Sbjct 1021147 GGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCAC 1021206 Query 149287 CCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCA 149343 | ||||||| || ||||||||||||| | | ||||||| || ||||||| || Sbjct 1021207 CAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCA 1021266 Query 149344 TAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCA 149403 | || || || ||| || ||||| || | |||| | ||| || || | Sbjct 1021267 TGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGA 1021326 Query 149404 CTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCA-GTC-GC 149460 ||| ||||| | |||||| || || ||| | ||| || || || || ||| Sbjct 1021327 TACGGTGGACGTTCAGGCCGATACCACCAGCCAT-CTTGGAAATCATGGCACATGTCTTT 1021385 Query 149461 CGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGC 149520 ||| ||| |||||| ||||| ||||||||| ||||||| || ||| ||||| ||| Sbjct 1021386 AGAGTGTC--GTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGG 1021443 Query 149521 ACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATT 149580 ||| || | | || || || ||| | |||||| ||| || ||||| ||| Sbjct 1021444 ACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGAATT 1021503 Query 149581 T-CTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCT 149639 | |||| ||| | | ||| | ||| || || || || |||| || || | ||| Sbjct 1021504 TGCTGG-ACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAACGCCA 1021562 Query 149640 ATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGC 149699 | || || ||||| | ||| ||||| |||||||| | | ||| ||| || || Sbjct 1021563 ACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGCTTCAGG 1021622 Query 149700 AAGTA--GCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGT 149757 | || ||| || ||||||||| |||| ||||| | ||||| ||||| ||| ||| Sbjct 1021623 AGATATGACCG--CTCCAGTGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGGTCGT 1021680 Query 149758 GGTCAATGGCGGCGTC 149773 | ||||||| | ||| Sbjct 1021681 AGACAATGGCAGAGTC 1021696 >seq35 Length=1329723 Score = 165 bits (182), Expect = 8e-36 Identities = 380/563 (67%), Gaps = 11/563 (2%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || |||||||||||| || ||||| || ||||| || ||||| ||| || ||||| | Sbjct 994078 CTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTC 994137 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTA-AAGTATTTCGGCTGGCCCAACTGT-ACGAGC 120468 ||| || || || |||||| | || || | || | || |||| | |||||| Sbjct 994138 CATGAAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCGTTG--CCAAGAGCGACGAGC 994195 Query 120469 AGTCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAA 120527 || || || || |||||||||||||||| ||| | || |||||||||||||||| Sbjct 994196 AGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTG-GCGTTCATGCCCAGCAG 994254 Query 120528 CGCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACAT 120587 || || | ||| || || ||||| | ||| || || || || ||| || Sbjct 994255 AGCACAGGGGAGAGCCTCGGTCAAGAACTCTTGCTCGATTCTGACGGCATCAGTGATGAT 994314 Query 120588 GGCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCG-GTAGTACAGGCACG 120646 | | ||| | | || || |||| | | || | || | |||||| | Sbjct 994315 TTCACGGATAATCT--CCTTGCTGGCGCGGTTC--TTCAGGTGAGAGTGGAGCAGGCAAG 994370 Query 120647 CAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGG 120706 ||||||| ||||||||||||||||| || || || ||||||||| || |||||||| | Sbjct 994371 CAAAGTCGGTGTGCAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAG 994430 Query 120707 GCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGC 120766 |||||| ||| || |||||| |||| |||| ||||||| || ||||| | | Sbjct 994431 GCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATAC 994490 Query 120767 CCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCC 120826 |||| ||| |||||||| || | ||||| || || | | |||| | ||||| Sbjct 994491 CCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTGGATCC 994550 Query 120827 ACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCA 120886 |||| |||||||| || ||||| || || | ||| || || ||| | ||||| | | Sbjct 994551 ACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGA 994610 Query 120887 GCATGTCGCGCTCGCCCTCCTCC 120909 | || ||||| || | |||| Sbjct 994611 GGTAGTTGCGCTGGCTGTGCTCC 994633 >seq44 Length=3047126 Score = 145 bits (160), Expect = 7e-30 Identities = 147/189 (78%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || |||||||||| || ||| ||| |||||| |||||||| | Sbjct 758292 GGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACC-GTCCTCAAGCTGCTTAC 758350 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| |||||||||||||||||||| || |||||||| |||||| || Sbjct 758351 CAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACT 758410 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| || |||| | |||||| |||| ||||| ||| |||||||| |||| Sbjct 758411 TGACGTTGTCAATGGTATCGGATGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAG 758470 Query 133642 TTTTTACGA 133650 | || |||| Sbjct 758471 TCTTGACGA 758479 Score = 134 bits (148), Expect = 1e-26 Identities = 152/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || || | | | |||||||| ||||||| Sbjct 758572 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCA-TCCTCGAGTTGCTTGC 758630 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || ||||||||||| ||||| ||||| |||||||| |||||| || Sbjct 758631 CAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACT 758690 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||||| | |||||| |||| ||||| ||| |||||||| || | Sbjct 758691 TCACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGG 758750 Query 133642 TTTTTACGAAAATCTGCATGG 133662 | || ||||| || ||||||| Sbjct 758751 TCTTGACGAAGATTTGCATGG 758771 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| |||| || ||| | | | |||||||||||||| | Sbjct 1396937 GGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAGCTGCTTAC 1396879 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | ||||||||||| || || ||||| |||||||| |||||| || Sbjct 1396878 CAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACT 1396819 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| || | ||||| || || || || || | Sbjct 1396818 TGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 1396759 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 1396758 TCTTGACGAAAATCTGCAT 1396740 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||| ||| ||||| || ||||| |||| || ||| ||| ||| || || Sbjct 758056 AAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACC-GTCTTCCAG 758114 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | ||||| ||||||||||| || ||||| || |||||||| || Sbjct 758115 CTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGAAT 758174 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||||| | || | || || | | |||||| || | |||| || ||||| Sbjct 758175 CTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCACTTCCAGTGTGATTGTCTTGCC 758234 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||| || || || |||||||| Sbjct 758235 GGTCAAAGTCTTGACAAAGATCTGCAT 758261 >seq42 Length=797865 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| ||| | || | |||||||| || || ||||| || |||||| Sbjct 706038 TCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCCGGGGGGATTCCCTCCTTG 706097 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | |||||||| || ||| || || | ||||| | Sbjct 706098 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATG 706157 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || ||||| ||||| || || |||||| Sbjct 706158 GTCTTGCCCGTCAGGGTCTTCACGAAA 706184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420008398440