Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq66 199 4e-46
seq35 165 8e-36
seq44 145 7e-30
seq42 107 2e-18
>seq66
Length=2244893
Score = 199 bits (220), Expect = 4e-46
Identities = 1113/1756 (63%), Gaps = 49/1756 (3%)
Strand=Plus/Plus
Query 148047 TTAAACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGT 148103
|| || |||||| ||| |||||||| || |||||||| || | ||| | | ||| |
Sbjct 1019961 TTCAAGGACTGGGACTGATCAATGAAAGCACCACGGTCGGCTGACATCTGGACGATGTGG 1020020
Query 148104 CGCTTTATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCG 148163
|||| |||||||| | ||||||||||| |||||| | |||||||| |
Sbjct 1020021 CGCTGAGAG---ATCTCCCAAACAGTCTTGTACAGGGCCTTGATGTCGGCGGGAATGTTG 1020077
Query 148164 TCGATGCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTAT 148223
||| ||| | || ||| | |||| || | || ||| | || | |
Sbjct 1020078 GGAATGTTCTGGATAGAACCGTTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCAG 1020137
Query 148224 AGGTTGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCG 148283
||| |||| || || | || || | | || || ||||| |||||||| ||
Sbjct 1020138 AGGCCAGTATCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCA 1020197
Query 148284 AGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAA 148343
|| || || ||| | || | |||| || | || || || | || ||||||||||
Sbjct 1020198 AGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCATTGTTGCCCAGG 1020257
Query 148344 ATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGA 148403
||||| | || | || ||||||||| || || |||| |||||| | |||| |
Sbjct 1020258 ATCTGGGAAGTGCTGGCAGTGGGCATGGGGGCGACGAGCAAACTGTTGCGAATACCGTGC 1020317
Query 148404 TTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCAC 148463
| || || | ||| || | |||| ||||| || | || | || | ||||
Sbjct 1020318 TCCTTAATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGTGGGCTTGACATCCCAC 1020377
Query 148464 ATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCG 148523
| ||| |||| |||||||| ||||| |||| | | || || || ||
Sbjct 1020378 AAGTCAAACTGGAGAATGCCTTCAGAGGCGGGTGATCCCTTGAATGACTCATAAGGACCC 1020437
Query 148524 TGCGCCGCCGCCAGTTCGC-AGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAAT 148582
| | || | || || | |||||||| || ||| ||| || ||||| ||
Sbjct 1020438 TCGATCTTGGCAATCTCCATAGAT-GCCTCGAGGGCAGCGTGGTAGATGGTCTCAAAGAT 1020496
Query 148583 TTGCCTGTTGAGCAGCGCCGCCGACTCGCT-TTCGTACGGCATACGCAGCCGCACAAACG 148641
|||| |||| | | ||| | | | |||| | || | |||||| | || |
Sbjct 1020497 TTGCTTGTTCAACT-CGCGAGCTTCGGGTGATTCGAAAGGAAGACGCAGAGCGAGGAAAG 1020555
Query 148642 CGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCG 148701
|||| ||||| ||||| || || || |||||||| ||||| |||| | ||| |
Sbjct 1020556 CGTCAGCAAGACCCTGAACACCAACACCAATGGGTCGGTGGCGGCTGTTACTGTTGCGAG 1020615
Query 148702 CGCTCTCGAGCGGA-TAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACC 148760
| ||| || ||| |||| ||| |||||||| || || || || || ||||||
Sbjct 1020616 C-CTCCTGAACGGGGTAGTAGTTCACATCGATGATGCGGTTGAGGTTACGGACAACCACC 1020674
Query 148761 TTTGTAATTCTGCGCAGCAATTCAAAATCGTA-----CTT-GTCATCTACGATGCATCGG 148814
|| |||| | | ||| | ||| || || ||| || || ||| || ||
Sbjct 1020675 TTGGTAACATCGTGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTATAGTCGA--CAAAGG 1020732
Query 148815 TTCACGGCGAT----AGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTC 148870
|| || || |||||| | ||||| || || ||| || ||||| ||||||
Sbjct 1020733 --CAGGGAGAGCCAAAGAGGCCAAGTTGCAGACAGCGACCTCGTCAGGGGCAGAGTACTC 1020790
Query 148871 TACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTT 148930
|||||||| | ||| || ||| || | ||| |||| |||||| || ||||||||
Sbjct 1020791 AACGATCTCAGTGCAGAGGTTGGAGCTTCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTT 1020850
Query 148931 GCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCAC 148990
|| |||||| || |||||||| ||||| | || ||||| || ||| | || |
Sbjct 1020851 GCGGTTGCAGGCATCCTTGTAAAGCATAAAGGGGTTACCAGTCTCAGTCTGGGCCTCTAG 1020910
Query 148991 TATGAACCGATGCAGGTCCTGCGCGCGCA----CTTGCTGCTCGTAGCGACCCTCCTGCT 149046
||| | ||| | ||| || || | ||||| | | | ||||||| ||
Sbjct 1020911 GATGGAGTACCACAGCTTCTGAGCTCGGATAGTCTTGCGACCCTTG----CCCTCCTTCT 1020966
Query 149047 CGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACT 149106
|||| |||||| |||||| | ||||| ||||| || | || || ||||| |
Sbjct 1020967 CGTACTTCTCATACAGAGCCTCGAATTCTTCGCCATAGCAGTCAGCAAGGCCAGGGCATT 1021026
Query 149107 TGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGG 149166
|| |||||||| | | ||| | || | | || |||||||| |||||||| |
Sbjct 1021027 CGTTGGGGCACATCAAAGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAACAGATCAG 1021086
Query 149167 GCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGC 149226
| | |||||| ||| | ||||| || || | ||||| ||| ||| ||
Sbjct 1021087 GGATCCAGAGAGCGAGGAACAGGTCACGGGCACGGACCTCTTCCTTGCCGTGGTTCTTGC 1021146
Query 149227 GCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGC 149286
| |||| || | || | || |||||||| ||||| | ||| | || | || |
Sbjct 1021147 GGAGGTCAAGGAACTCAAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCAC 1021206
Query 149287 CCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCA 149343
| ||||||| || ||||||||||||| | | ||||||| || ||||||| ||
Sbjct 1021207 CAGGGCGCTTGTTGCCACCCTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGAAGCA 1021266
Query 149344 TAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCA 149403
| || || || ||| || ||||| || | |||| | ||| || || |
Sbjct 1021267 TGGGGATGATACCGTTGGAGGTACCGTTGGTGCCGGCAATGTAAGAGCCCGTAGCACGGA 1021326
Query 149404 CTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCA-GTC-GC 149460
||| ||||| | |||||| || || ||| | ||| || || || || |||
Sbjct 1021327 TACGGTGGACGTTCAGGCCGATACCACCAGCCAT-CTTGGAAATCATGGCACATGTCTTT 1021385
Query 149461 CGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGC 149520
||| ||| |||||| ||||| ||||||||| ||||||| || ||| ||||| |||
Sbjct 1021386 AGAGTGTC--GTAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGG 1021443
Query 149521 ACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATT 149580
||| || | | || || || ||| | |||||| ||| || ||||| |||
Sbjct 1021444 ACAGCTGAGCTTGTGGGGTACCAGCGTTGAAGAGGGTGGGAGAGGCATGGGTAAAGAATT 1021503
Query 149581 T-CTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCT 149639
| |||| ||| | | ||| | ||| || || || || |||| || || | |||
Sbjct 1021504 TGCTGG-ACATGAGGTGGTATGTCTCAAGGACACGCTCAATGTTGTCTCCCCAAACGCCA 1021562
Query 149640 ATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGC 149699
| || || ||||| | ||| ||||| |||||||| | | ||| ||| || ||
Sbjct 1021563 ACAGCCACACGCATAATCATGTGCTGTGGTCGCTCAACAATCTTGCCATCAAGCTTCAGG 1021622
Query 149700 AAGTA--GCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGT 149757
| || ||| || ||||||||| |||| ||||| | ||||| ||||| ||| |||
Sbjct 1021623 AGATATGACCG--CTCCAGTGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGGTCGT 1021680
Query 149758 GGTCAATGGCGGCGTC 149773
| ||||||| | |||
Sbjct 1021681 AGACAATGGCAGAGTC 1021696
>seq35
Length=1329723
Score = 165 bits (182), Expect = 8e-36
Identities = 380/563 (67%), Gaps = 11/563 (2%)
Strand=Plus/Plus
Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410
|| |||||||||||| || ||||| || ||||| || ||||| ||| || ||||| |
Sbjct 994078 CTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTC 994137
Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTA-AAGTATTTCGGCTGGCCCAACTGT-ACGAGC 120468
||| || || || |||||| | || || | || | || |||| | ||||||
Sbjct 994138 CATGAAGTCAAAGGGGTTGGAGGACTTGTAAATCTTCTCGTTG--CCAAGAGCGACGAGC 994195
Query 120469 AGTCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAA 120527
|| || || || |||||||||||||||| ||| | || ||||||||||||||||
Sbjct 994196 AGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGGTG-GCGTTCATGCCCAGCAG 994254
Query 120528 CGCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACAT 120587
|| || | ||| || || ||||| | ||| || || || || ||| ||
Sbjct 994255 AGCACAGGGGAGAGCCTCGGTCAAGAACTCTTGCTCGATTCTGACGGCATCAGTGATGAT 994314
Query 120588 GGCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCG-GTAGTACAGGCACG 120646
| | ||| | | || || |||| | | || | || | |||||| |
Sbjct 994315 TTCACGGATAATCT--CCTTGCTGGCGCGGTTC--TTCAGGTGAGAGTGGAGCAGGCAAG 994370
Query 120647 CAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGG 120706
||||||| ||||||||||||||||| || || || ||||||||| || |||||||| |
Sbjct 994371 CAAAGTCGGTGTGCAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCAG 994430
Query 120707 GCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGC 120766
|||||| ||| || |||||| |||| |||| ||||||| || ||||| | |
Sbjct 994431 GCATGAGACCTCTCTTCTTGAGCCAGAAGATGGAGGCAAAGGCTCCGCTGAAGAAGATAC 994490
Query 120767 CCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCC 120826
|||| ||| |||||||| || | ||||| || || | | |||| | |||||
Sbjct 994491 CCTCGACGGCAGCAAAGGCAACAAGGCGCTGAGCAAAGGAAGAGTCCTTGTCCTGGATCC 994550
Query 120827 ACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCA 120886
|||| |||||||| || ||||| || || | ||| || || ||| | ||||| | |
Sbjct 994551 ACTTGATGGCCCAGTCAGCCTTCTTACGGATGCAAGGAATGGTCTCAATGGCGTTGAAGA 994610
Query 120887 GCATGTCGCGCTCGCCCTCCTCC 120909
| || ||||| || | ||||
Sbjct 994611 GGTAGTTGCGCTGGCTGTGCTCC 994633
>seq44
Length=3047126
Score = 145 bits (160), Expect = 7e-30
Identities = 147/189 (78%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||| ||||| || |||||||||| || ||| ||| |||||| |||||||| |
Sbjct 758292 GGTAGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACC-GTCCTCAAGCTGCTTAC 758350
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | ||||| |||||||||||||||||||| || |||||||| |||||| ||
Sbjct 758351 CAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACT 758410
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | |||| || |||| | |||||| |||| ||||| ||| |||||||| ||||
Sbjct 758411 TGACGTTGTCAATGGTATCGGATGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAG 758470
Query 133642 TTTTTACGA 133650
| || ||||
Sbjct 758471 TCTTGACGA 758479
Score = 134 bits (148), Expect = 1e-26
Identities = 152/201 (76%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||| ||||| || ||||| ||| || || | | | |||||||| |||||||
Sbjct 758572 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCA-TCCTCGAGTTGCTTGC 758630
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| | || || ||||||||||| ||||| ||||| |||||||| |||||| ||
Sbjct 758631 CAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACT 758690
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | || | ||||||| | |||||| |||| ||||| ||| |||||||| || |
Sbjct 758691 TCACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGG 758750
Query 133642 TTTTTACGAAAATCTGCATGG 133662
| || ||||| || |||||||
Sbjct 758751 TCTTGACGAAGATTTGCATGG 758771
Score = 122 bits (134), Expect = 8e-23
Identities = 148/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||| ||||| || ||||| |||| || ||| | | | |||||||||||||| |
Sbjct 1396937 GGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAGCTGCTTAC 1396879
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || | ||||||||||| || || ||||| |||||||| |||||| ||
Sbjct 1396878 CAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACT 1396819
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | || | ||||||| | |||||| || | ||||| || || || || || |
Sbjct 1396818 TGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 1396759
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||||||||||||
Sbjct 1396758 TCTTGACGAAAATCTGCAT 1396740
Score = 114 bits (126), Expect = 1e-20
Identities = 151/207 (73%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | |||| ||| ||||| || ||||| |||| || ||| ||| ||| || ||
Sbjct 758056 AAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACC-GTCTTCCAG 758114
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|||||| || ||| | ||||| ||||||||||| || ||||| || |||||||| ||
Sbjct 758115 CTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGAAT 758174
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
|||| ||||| | || | || || | | |||||| || | |||| || |||||
Sbjct 758175 CTTTGACTTGACGTTGTCGATGGTATCAGATGACTCCACTTCCAGTGTGATTGTCTTGCC 758234
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||| ||| || || || ||||||||
Sbjct 758235 GGTCAAAGTCTTGACAAAGATCTGCAT 758261
>seq42
Length=797865
Score = 107 bits (118), Expect = 2e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||||||||||||||| ||| | || | |||||||| || || ||||| || ||||||
Sbjct 706038 TCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCCGGGGGGATTCCCTCCTTG 706097
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | || | |||||||| || ||| || || | ||||| |
Sbjct 706098 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATG 706157
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652
|| ||||| ||||| || || ||||||
Sbjct 706158 GTCTTGCCCGTCAGGGTCTTCACGAAA 706184
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483420008398440
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