Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq35 116 4e-21 seq44 95.1 1e-14 >seq35 Length=1329723 Score = 116 bits (128), Expect = 4e-21 Identities = 344/516 (67%), Gaps = 17/516 (3%) Strand=Plus/Minus Query 46761 CCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACG 46820 || ||| | || || ||||| | |||||||| ||||||||| || | || | | | Sbjct 994587 CCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGACTCTTCC 994528 Query 46821 CTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGG-GCAGT-T 46878 | || ||||| | || || || || ||||| || | | || ||| | | || | Sbjct 994527 TTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGG--TATCTTCTTCAGCGGAGCCT 994470 Query 46879 TTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACG 46938 ||||| |||| || | | || | | ||| | ||||| |||||||| ||| |||| Sbjct 994469 TTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACG 994410 Query 46939 AGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT-CTATTACAAGACG 46997 || | ||||| || ||||| || || ||||| |||||||| || || || | | | Sbjct 994409 AGCTCATCTCTCGTGACGAGGGCCTGCACACCGACTTTGCTTGCCTGCT----CCACTCT 994354 Query 46998 CGCGTGAATGAGAAATTAAACTCGGACACGATCC-TGAGCATGTTTAGGGAGGCGGTGAG 47056 | | |||| | | | ||| | |||| ||| || | | || || || || Sbjct 994353 CACCTGAAGAACCGCGCCAGCAAGGAGATTATCCGTGAA-ATCATCACTGATGCCGTCAG 994295 Query 47057 CATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACA 47116 ||||| | ||||| || || | ||| || ||| || |||||||||||||||| || Sbjct 994294 AATCGAGCAAGAGTTCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGC-CA 994236 Query 47117 GTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAAC 47175 || ||| | || ||||||||||| || ||||||||| | || || || |||| Sbjct 994235 CCCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTCGTCGCTCTTGG-CAAC 994177 Query 47176 CGAAATATTT--TAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGG 47233 || |||| | | ||| || || ||||| || ||| | ||||| || || | || Sbjct 994176 GAGAAGATTTACAAGTCCTC-CAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGG 994118 Query 47234 CAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 ||| ||||| || |||||||| || ||||| ||||| Sbjct 994117 CAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTA 994082 >seq44 Length=3047126 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| |||| || | | | ||||| || || |||||||||||||||| ||| Sbjct 1396961 ACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 1396902 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| |||||||| ||||| | | |||| | ||||| || || || || ||||| Sbjct 1396901 GCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCC 1396842 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || |||| | |||||| || | Sbjct 1396841 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 1396782 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || || || || || | |||||||||||| Sbjct 1396781 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1396740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610419549160