Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq35 116 4e-21
seq44 95.1 1e-14
>seq35
Length=1329723
Score = 116 bits (128), Expect = 4e-21
Identities = 344/516 (67%), Gaps = 17/516 (3%)
Strand=Plus/Minus
Query 46761 CCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACG 46820
|| ||| | || || ||||| | |||||||| ||||||||| || | || | | |
Sbjct 994587 CCTTGCATCCGTAAGAAGGCTGACTGGGCCATCAAGTGGATCCAGGACAAGGACTCTTCC 994528
Query 46821 CTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGG-GCAGT-T 46878
| || ||||| | || || || || ||||| || | | || ||| | | || |
Sbjct 994527 TTTGCTCAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGG--TATCTTCTTCAGCGGAGCCT 994470
Query 46879 TTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACG 46938
||||| |||| || | | || | | ||| | ||||| |||||||| ||| ||||
Sbjct 994469 TTGCCTCCATCTTCTGGCTCAAGAAGAGAGGTCTCATGCCTGGCCTGACCTTCTCCAACG 994410
Query 46939 AGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT-CTATTACAAGACG 46997
|| | ||||| || ||||| || || ||||| |||||||| || || || | | |
Sbjct 994409 AGCTCATCTCTCGTGACGAGGGCCTGCACACCGACTTTGCTTGCCTGCT----CCACTCT 994354
Query 46998 CGCGTGAATGAGAAATTAAACTCGGACACGATCC-TGAGCATGTTTAGGGAGGCGGTGAG 47056
| | |||| | | | ||| | |||| ||| || | | || || || ||
Sbjct 994353 CACCTGAAGAACCGCGCCAGCAAGGAGATTATCCGTGAA-ATCATCACTGATGCCGTCAG 994295
Query 47057 CATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACA 47116
||||| | ||||| || || | ||| || ||| || |||||||||||||||| ||
Sbjct 994294 AATCGAGCAAGAGTTCTTGACCGAGGCTCTCCCCTGTGCTCTGCTGGGCATGAACGC-CA 994236
Query 47117 GTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAAC 47175
|| ||| | || ||||||||||| || ||||||||| | || || || ||||
Sbjct 994235 CCCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTCGTCGCTCTTGG-CAAC 994177
Query 47176 CGAAATATTT--TAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGG 47233
|| |||| | | ||| || || ||||| || ||| | ||||| || || | ||
Sbjct 994176 GAGAAGATTTACAAGTCCTC-CAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGG 994118
Query 47234 CAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269
||| ||||| || |||||||| || ||||| |||||
Sbjct 994117 CAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTA 994082
>seq44
Length=3047126
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| ||||| |||| || | | | ||||| || || |||||||||||||||| |||
Sbjct 1396961 ACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 1396902
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| ||| |||||||| ||||| | | |||| | ||||| || || || || |||||
Sbjct 1396901 GCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCC 1396842
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|| || || || || || | | || | || |||| | |||||| || |
Sbjct 1396841 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 1396782
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | ||| || || || || || || | ||||||||||||
Sbjct 1396781 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 1396740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476610419549160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |