Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03- 26] 131 sequences; 36,403,196 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq35 224 1e-52 seq66 120 4e-21 seq44 87.8 3e-11 >seq35 Length=1329723 Score = 224 bits (248), Expect = 1e-52 Identities = 362/509 (71%), Gaps = 16/509 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| |||||||||||||| ||||| ||||||||||| ||| | || | Sbjct 994924 GATCTGGCAAATGTAC-AAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATC 994866 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | || | | ||||| ||| ||| ||| |||||| | |||||| Sbjct 994865 TGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCT 994806 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| |||| ||||| ||| || ||| ||| ||||| || ||||||||||| || Sbjct 994805 CTCACATCCTGGCCTTCTTT-GCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGAG 994747 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || | ||||| || | || ||||| || | || ||||| ||||||||| Sbjct 994746 CGTTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATG 994687 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||||||||| || |||||||| || || |||||||||||||||||||| | Sbjct 994686 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGCAC 994627 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 | || || ||||||| |||||| || || | || | | | || ||||| Sbjct 994626 AGCCAGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGAAGGCT 994567 Query 1456132 GACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188 |||||||| || ||||||||| ||||||| ||| | |||||| |||| || | Sbjct 994566 GACTGGGCCATCAAGTGGATCCAGGACAAGGA----CTCTTC-CTTTGCTCAGCGCCTTG 994512 Query 1456189 TCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTG-CGCCATCTTTTGG 1456246 | | |||||| | ||||||||| ||||| ||| | | || | || | ||||||| ||| Sbjct 994511 TTGCCTTTGCTGCCGTCGAGGGTATCTTCTTC-AGCGGAGCCTTTGCCTCCATCTTCTGG 994453 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||| | || |||||||| || || Sbjct 994452 CTCAAGAAGAGAGGTCTCATGCCTGGCCT 994424 Score = 118 bits (130), Expect = 2e-20 Identities = 181/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| || |||||| |||||| ||||||| | | |||| | || || || Sbjct 994314 ATCATCACTGATGCCGTCAGAATCGAGCAAGAGTTCTTGACCGAGGCTCTCCCCTGTGCT 994255 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || | ||||||||||||||| || ||| |||||||||| | ||||| ||||| || | Sbjct 994254 CTGCTGGGCATGAACGCCACC-CTGATGAAGCAGTACATTG-AGTTTGTTGCCGATCGTC 994197 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||||| || || ||| | |||||| ||| | | ||||||| || | ||| Sbjct 994196 TGCTCGTCGCTCTTGGCAAC-GAGAAGATTTACAAGTCCTCCAACCCCTTTGACTTCATG 994138 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| ||||| || | |||||||||||||| |||||| || || ||||||||| Sbjct 994137 GAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTACCAG 994078 Query 1456762 AAGGCCGGCGTCA 1456774 |||||||| |||| Sbjct 994077 AAGGCCGGTGTCA 994065 >seq66 Length=2244893 Score = 120 bits (132), Expect = 4e-21 Identities = 332/505 (66%), Gaps = 23/505 (5%) Strand=Plus/Minus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| || ||| ||||||| | ||| ||||||||| |||| ||||| Sbjct 1021711 CACAAGGAGGAGCTTGACTCTGCCATTGTCTACGACCGAGACTTCAACTACCAATACTTC 1021652 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTA---CCTGACCAAAGTGCGCGATATTGTCGTCGAG 259798 || | ||| || ||||| || ||||| | || | ||||| | || Sbjct 1021651 GGCTTCAAGACACTGGAGCGGTCATATCTCCTGAAGCTTGATGGCAAGATTGTTG---AG 1021595 Query 259799 CGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGAC 259858 || || ||| | ||| | |||||||| || ||||| ||||| || ||| Sbjct 1021594 CGACCACAGCACATGATTATGCGTGTGGCTGTTGGC--------GTTTGGGGA----GAC 1021547 Query 259859 AATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAG-TTGTTCACCTC 259917 || | |||| || || | || ||| | |||||| ||||| || || ||| Sbjct 1021546 AACA---TTGAGCGTGTCCTTGAGACATACCACCTCATGTC-CAGCAAATTCTTTACCCA 1021491 Query 259918 AGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCT 259977 || | ||||| ||||| || || || || || | | ||| || || ||||| || Sbjct 1021490 TGCCTCTCCCACCCTCTTCAACGCTGGTACCCCACAAGCTCAGCTGTCCTCATGCTTCCT 1021431 Query 259978 GTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCT 260037 | |||||||||||| ||| || ||||| ||||| ||||| || ||| || || | Sbjct 1021430 GGTGGACATGAAGGACGACAGCATTGAGGGTATCTACGACACTCTAAAGACATGTGCCAT 1021371 Query 260038 CATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGC 260097 || |||||| ||| || || ||||| | || ||| | || || ||||| | Sbjct 1021370 GATTTCCAAGATGGCTGGTGGTATCGGCCTGAACGTCCACCGTATCCGTGCTACGGGCTC 1021311 Query 260098 CTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAA 260157 ||| | || ||||||||||| |||||||| | | ||||||||||| || || || Sbjct 1021310 TTACATTGCCGGCACCAACGGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAA 1021251 Query 260158 CGACACGGCGCGCTACGTCGACCAG 260182 | |||| || | |||||||||||| Sbjct 1021250 CAACACTGCCAGATACGTCGACCAG 1021226 >seq44 Length=3047126 Score = 87.8 bits (96), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 || ||||||||||| |||| || |||||| ||| || |||||||||| |||||||||| Sbjct 3000532 CGAGAGATCCAGACATCCGTCCGACTGATCCTGCCGGGTGAACTGGCCAAGCACGCCGTC 3000591 Query 725130 TCCGAGGGCACCA 725142 ||||||||||||| Sbjct 3000592 TCCGAGGGCACCA 3000604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177798564809222