Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20atroviride_20[genbank_20GCA_5F000963795.1_202015-03-
26] 131 sequences; 36,403,196 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq35 224 1e-52
seq66 120 4e-21
seq44 87.8 3e-11
>seq35
Length=1329723
Score = 224 bits (248), Expect = 1e-52
Identities = 362/509 (71%), Gaps = 16/509 (3%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| |||||||||||||| ||||| ||||||||||| ||| | || |
Sbjct 994924 GATCTGGCAAATGTAC-AAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAAGAGATTGATC 994866
Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891
| | || | | ||||| ||| ||| ||| |||||| | ||||||
Sbjct 994865 TGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCT 994806
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
||| |||| ||||| ||| || ||| ||| ||||| || ||||||||||| ||
Sbjct 994805 CTCACATCCTGGCCTTCTTT-GCTGCCTCCGACGGCATTGTCAACGAGAACCTGGTCGAG 994747
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
|| || | ||||| || | || ||||| || | || ||||| |||||||||
Sbjct 994746 CGTTTCAGCGGCGAGGTTCAGATCCCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATG 994687
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071
|| || ||||||||||| || |||||||| || || |||||||||||||||||||| |
Sbjct 994686 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACGTCAAGGAGCAC 994627
Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131
| || || ||||||| |||||| || || | || | | | || |||||
Sbjct 994626 AGCCAGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGTAAGAAGGCT 994567
Query 1456132 GACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188
|||||||| || ||||||||| ||||||| ||| | |||||| |||| || |
Sbjct 994566 GACTGGGCCATCAAGTGGATCCAGGACAAGGA----CTCTTC-CTTTGCTCAGCGCCTTG 994512
Query 1456189 TCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTG-CGCCATCTTTTGG 1456246
| | |||||| | ||||||||| ||||| ||| | | || | || | ||||||| |||
Sbjct 994511 TTGCCTTTGCTGCCGTCGAGGGTATCTTCTTC-AGCGGAGCCTTTGCCTCCATCTTCTGG 994453
Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||||||||| | || |||||||| || ||
Sbjct 994452 CTCAAGAAGAGAGGTCTCATGCCTGGCCT 994424
Score = 118 bits (130), Expect = 2e-20
Identities = 181/253 (72%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|||||| || |||||| |||||| ||||||| | | |||| | || || ||
Sbjct 994314 ATCATCACTGATGCCGTCAGAATCGAGCAAGAGTTCTTGACCGAGGCTCTCCCCTGTGCT 994255
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| | ||||||||||||||| || ||| |||||||||| | ||||| ||||| || |
Sbjct 994254 CTGCTGGGCATGAACGCCACC-CTGATGAAGCAGTACATTG-AGTTTGTTGCCGATCGTC 994197
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
|||||| || || ||| | |||||| ||| | | ||||||| || | |||
Sbjct 994196 TGCTCGTCGCTCTTGGCAAC-GAGAAGATTTACAAGTCCTCCAACCCCTTTGACTTCATG 994138
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761
||| ||||| || | |||||||||||||| |||||| || || |||||||||
Sbjct 994137 GAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTACCAG 994078
Query 1456762 AAGGCCGGCGTCA 1456774
|||||||| ||||
Sbjct 994077 AAGGCCGGTGTCA 994065
>seq66
Length=2244893
Score = 120 bits (132), Expect = 4e-21
Identities = 332/505 (66%), Gaps = 23/505 (5%)
Strand=Plus/Minus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||||||||| || ||| ||||||| | ||| ||||||||| |||| |||||
Sbjct 1021711 CACAAGGAGGAGCTTGACTCTGCCATTGTCTACGACCGAGACTTCAACTACCAATACTTC 1021652
Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTA---CCTGACCAAAGTGCGCGATATTGTCGTCGAG 259798
|| | ||| || ||||| || ||||| | || | ||||| | ||
Sbjct 1021651 GGCTTCAAGACACTGGAGCGGTCATATCTCCTGAAGCTTGATGGCAAGATTGTTG---AG 1021595
Query 259799 CGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGAC 259858
|| || ||| | ||| | |||||||| || ||||| ||||| || |||
Sbjct 1021594 CGACCACAGCACATGATTATGCGTGTGGCTGTTGGC--------GTTTGGGGA----GAC 1021547
Query 259859 AATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAG-TTGTTCACCTC 259917
|| | |||| || || | || ||| | |||||| ||||| || || |||
Sbjct 1021546 AACA---TTGAGCGTGTCCTTGAGACATACCACCTCATGTC-CAGCAAATTCTTTACCCA 1021491
Query 259918 AGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCT 259977
|| | ||||| ||||| || || || || || | | ||| || || ||||| ||
Sbjct 1021490 TGCCTCTCCCACCCTCTTCAACGCTGGTACCCCACAAGCTCAGCTGTCCTCATGCTTCCT 1021431
Query 259978 GTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCT 260037
| |||||||||||| ||| || ||||| ||||| ||||| || ||| || || |
Sbjct 1021430 GGTGGACATGAAGGACGACAGCATTGAGGGTATCTACGACACTCTAAAGACATGTGCCAT 1021371
Query 260038 CATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGC 260097
|| |||||| ||| || || ||||| | || ||| | || || ||||| |
Sbjct 1021370 GATTTCCAAGATGGCTGGTGGTATCGGCCTGAACGTCCACCGTATCCGTGCTACGGGCTC 1021311
Query 260098 CTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAA 260157
||| | || ||||||||||| |||||||| | | ||||||||||| || || ||
Sbjct 1021310 TTACATTGCCGGCACCAACGGTACCTCCAACGGTATCATCCCCATGCTTCGAGTCTTCAA 1021251
Query 260158 CGACACGGCGCGCTACGTCGACCAG 260182
| |||| || | ||||||||||||
Sbjct 1021250 CAACACTGCCAGATACGTCGACCAG 1021226
>seq44
Length=3047126
Score = 87.8 bits (96), Expect = 3e-11
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129
|| ||||||||||| |||| || |||||| ||| || |||||||||| ||||||||||
Sbjct 3000532 CGAGAGATCCAGACATCCGTCCGACTGATCCTGCCGGGTGAACTGGCCAAGCACGCCGTC 3000591
Query 725130 TCCGAGGGCACCA 725142
|||||||||||||
Sbjct 3000592 TCCGAGGGCACCA 3000604
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177798564809222
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |